Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0504 and Shew_0505 are separated by 56 nucleotides Shew_0505 and Shew_0506 are separated by 67 nucleotides
Shew_0504: Shew_0504 - NnrS family protein (RefSeq), at 561,877 to 563,088
_0504
Shew_0505: Shew_0505 - nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 563,145 to 564,503
_0505
Shew_0506: Shew_0506 - LysR family transcriptional regulator (RefSeq), at 564,571 to 565,488
_0506
Position (kb) 563
564
565 Strain fitness (log2 ratio) -1
0
1 at 562.331 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.518 kb on + strand, within Shew_0504 at 562.746 kb on - strand, within Shew_0504 at 562.847 kb on + strand, within Shew_0504 at 562.872 kb on - strand, within Shew_0504 at 563.274 kb on + strand at 563.369 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.404 kb on + strand, within Shew_0505 at 563.607 kb on + strand, within Shew_0505 at 563.831 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.969 kb on + strand, within Shew_0505 at 563.977 kb on - strand, within Shew_0505 at 563.988 kb on - strand, within Shew_0505 at 564.182 kb on - strand, within Shew_0505 at 564.279 kb on + strand, within Shew_0505 at 564.279 kb on + strand, within Shew_0505 at 564.419 kb on + strand at 564.433 kb on + strand at 564.478 kb on - strand at 564.583 kb on - strand at 564.723 kb on + strand, within Shew_0506 at 564.728 kb on + strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.731 kb on - strand, within Shew_0506 at 564.736 kb on - strand, within Shew_0506 at 564.977 kb on - strand, within Shew_0506 at 565.411 kb on - strand at 565.443 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 562,331 + Shew_0504 0.37 +0.1 562,518 + Shew_0504 0.53 +0.3 562,518 + Shew_0504 0.53 -0.4 562,746 - Shew_0504 0.72 -1.3 562,847 + Shew_0504 0.80 +0.2 562,872 - Shew_0504 0.82 +0.5 563,274 + +0.1 563,369 + Shew_0505 0.16 -0.1 563,404 + Shew_0505 0.19 -0.0 563,404 + Shew_0505 0.19 +0.0 563,404 + Shew_0505 0.19 +0.0 563,607 + Shew_0505 0.34 -0.2 563,831 + Shew_0505 0.50 +0.4 563,969 + Shew_0505 0.61 -0.1 563,969 + Shew_0505 0.61 -0.0 563,977 - Shew_0505 0.61 -0.1 563,988 - Shew_0505 0.62 -0.2 564,182 - Shew_0505 0.76 -0.1 564,279 + Shew_0505 0.83 -0.1 564,279 + Shew_0505 0.83 -0.5 564,419 + +0.5 564,433 + -0.4 564,478 - +0.1 564,583 - +0.6 564,723 + Shew_0506 0.17 -0.6 564,728 + Shew_0506 0.17 +0.2 564,731 - Shew_0506 0.17 +0.4 564,731 - Shew_0506 0.17 +0.6 564,736 - Shew_0506 0.18 -0.0 564,977 - Shew_0506 0.44 +0.3 565,411 - -0.3 565,443 + -0.7
Or see this region's nucleotide sequence