Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0444 and Shew_0445 are separated by 124 nucleotides Shew_0445 and Shew_0446 are separated by 546 nucleotides Shew_0446 and Shew_0447 are separated by 77 nucleotides
Shew_0444: Shew_0444 - MscS mechanosensitive ion channel (RefSeq), at 495,031 to 496,653
_0444
Shew_0445: Shew_0445 - hypothetical protein (RefSeq), at 496,778 to 497,113
_0445
Shew_0446: Shew_0446 - hypothetical protein (RefSeq), at 497,660 to 497,920
_0446
Shew_0447: Shew_0447 - hypothetical protein (RefSeq), at 497,998 to 499,203
_0447
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1 at 496.039 kb on + strand, within Shew_0444 at 496.097 kb on - strand, within Shew_0444 at 496.139 kb on - strand, within Shew_0444 at 496.407 kb on - strand, within Shew_0444 at 496.433 kb on - strand, within Shew_0444 at 496.606 kb on + strand at 496.702 kb on - strand at 496.737 kb on + strand at 496.796 kb on + strand at 496.984 kb on + strand, within Shew_0445 at 497.051 kb on - strand, within Shew_0445 at 497.221 kb on + strand at 497.229 kb on - strand at 497.229 kb on - strand at 497.250 kb on - strand at 497.676 kb on + strand at 497.684 kb on - strand at 497.811 kb on + strand, within Shew_0446 at 498.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 496,039 + Shew_0444 0.62 -0.5 496,097 - Shew_0444 0.66 -0.9 496,139 - Shew_0444 0.68 -1.0 496,407 - Shew_0444 0.85 +0.3 496,433 - Shew_0444 0.86 +0.8 496,606 + -0.2 496,702 - +0.5 496,737 + -0.9 496,796 + -1.1 496,984 + Shew_0445 0.61 +0.0 497,051 - Shew_0445 0.81 -0.5 497,221 + +0.1 497,229 - -0.7 497,229 - +0.4 497,250 - +0.7 497,676 + +0.6 497,684 - +0.5 497,811 + Shew_0446 0.58 -0.3 498,096 + +1.3
Or see this region's nucleotide sequence