Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25155

Experiment: Temperature shift 30_to_21

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 30_to_21
5,622,378	+				-1.5
5,622,378	+				+0.1
5,622,386	-				+1.3
5,622,441	+				+0.5
5,622,441	+				-0.4
5,622,442	-				+1.1
5,622,442	-				-0.5
5,622,442	-				+1.1
5,622,442	-				-1.3
5,622,442	-				-1.4
5,622,516	+				-0.0
5,622,516	+				-0.3
5,622,516	+				-0.6
5,622,516	+				+0.3
5,622,516	+				-0.6
5,622,516	+				-1.9
5,622,516	+				-0.7
5,622,517	-				+1.1
5,622,517	-				+0.1
5,622,517	-				+0.7
5,622,517	-				-0.8
5,622,517	-				+1.6
5,622,517	-				+0.5
5,622,517	-				-0.3
5,622,517	-				-0.4
5,622,517	-				-1.2
5,622,520	+				-2.1
5,622,520	+				-0.1
5,622,520	+				-0.0
5,622,520	+				-1.0
5,622,520	+				-0.1
5,622,521	-				-2.1
5,622,521	-				+0.5
5,622,521	-				-1.2
5,622,521	-				-1.5
5,622,540	+		PFLU_RS25145	0.12	-0.3
5,622,540	+		PFLU_RS25145	0.12	+0.9
5,622,540	+		PFLU_RS25145	0.12	+0.3
5,622,540	+		PFLU_RS25145	0.12	-0.1
5,622,540	+		PFLU_RS25145	0.12	-0.6
5,622,540	+		PFLU_RS25145	0.12	+1.6
5,622,540	+		PFLU_RS25145	0.12	-1.2
5,622,540	+		PFLU_RS25145	0.12	+0.5
5,622,540	+		PFLU_RS25145	0.12	+0.8
5,622,541	-		PFLU_RS25145	0.12	+0.2
5,622,541	-		PFLU_RS25145	0.12	+0.5
5,622,541	-		PFLU_RS25145	0.12	+0.3
5,622,541	-		PFLU_RS25145	0.12	+0.3
5,622,544	+		PFLU_RS25145	0.13	+0.2
5,622,544	+		PFLU_RS25145	0.13	+0.4
5,622,544	+		PFLU_RS25145	0.13	+0.5
5,622,544	+		PFLU_RS25145	0.13	+0.8
5,622,544	+		PFLU_RS25145	0.13	+0.6
5,622,545	-		PFLU_RS25145	0.14	-1.1
5,622,545	-		PFLU_RS25145	0.14	-0.6
5,622,545	-		PFLU_RS25145	0.14	-0.4
5,622,646	+		PFLU_RS25145	0.52	+0.5
5,622,646	+		PFLU_RS25145	0.52	+0.2
5,622,647	-		PFLU_RS25145	0.52	+1.9
5,622,706	+		PFLU_RS25145	0.75	+0.3
5,622,707	-		PFLU_RS25145	0.75	+0.7
5,622,707	-		PFLU_RS25145	0.75	-1.0
5,622,707	-		PFLU_RS25145	0.75	-0.1
5,622,733	-		PFLU_RS25145	0.85	-1.3
5,622,733	-		PFLU_RS25145	0.85	-0.1
5,622,768	+				-0.6
5,622,768	+				-0.7
5,622,768	+				+0.4
5,622,768	+				-0.3
5,622,768	+				+0.8
5,622,769	-				-0.2
5,622,769	-				-0.3
5,622,769	-				+1.9
5,622,769	-				-0.0
5,622,769	-				+0.6
5,622,769	-				-1.3
5,622,769	-				-0.9
5,622,769	-				+1.5
5,622,794	+				+1.1
5,622,794	+				+0.1
5,622,795	-				+1.1
5,622,795	-				-0.2
5,622,847	+		PFLU_RS25150	0.21	+0.6
5,622,847	+		PFLU_RS25150	0.21	-0.1
5,622,938	+		PFLU_RS25150	0.50	-0.1
5,622,938	+		PFLU_RS25150	0.50	-0.1
5,622,938	+		PFLU_RS25150	0.50	+1.3
5,622,938	+		PFLU_RS25150	0.50	-0.9
5,622,938	+		PFLU_RS25150	0.50	+0.7
5,622,938	+		PFLU_RS25150	0.50	+1.1
5,622,938	+		PFLU_RS25150	0.50	+0.7
5,622,938	+		PFLU_RS25150	0.50	-0.1
5,622,938	+		PFLU_RS25150	0.50	+0.5
5,622,938	+		PFLU_RS25150	0.50	-0.5
5,622,938	+		PFLU_RS25150	0.50	+0.6
5,622,938	+		PFLU_RS25150	0.50	-0.9
5,622,938	+		PFLU_RS25150	0.50	+0.1
5,622,938	+		PFLU_RS25150	0.50	-1.3
5,622,938	+		PFLU_RS25150	0.50	-2.9
5,622,938	+		PFLU_RS25150	0.50	+0.6
5,622,938	+		PFLU_RS25150	0.50	+0.2
5,622,938	+		PFLU_RS25150	0.50	-1.2
5,622,938	+		PFLU_RS25150	0.50	+1.2
5,622,939	-		PFLU_RS25150	0.50	+0.7
5,622,939	-		PFLU_RS25150	0.50	+0.4
5,622,939	-		PFLU_RS25150	0.50	+0.1
5,622,939	-		PFLU_RS25150	0.50	+0.7
5,622,939	-		PFLU_RS25150	0.50	+0.2
5,622,939	-		PFLU_RS25150	0.50	+1.9
5,622,939	-		PFLU_RS25150	0.50	+0.3
5,622,939	-		PFLU_RS25150	0.50	-0.7
5,622,939	-		PFLU_RS25150	0.50	+0.9
5,622,939	-		PFLU_RS25150	0.50	+1.2
5,622,939	-		PFLU_RS25150	0.50	+2.3
5,622,939	-		PFLU_RS25150	0.50	-0.7
5,622,939	-		PFLU_RS25150	0.50	-0.7
5,622,939	-		PFLU_RS25150	0.50	-1.5
5,622,939	-		PFLU_RS25150	0.50	-1.7
5,622,939	-		PFLU_RS25150	0.50	+0.4
5,622,939	-		PFLU_RS25150	0.50	-0.4
5,622,939	-		PFLU_RS25150	0.50	-0.2
5,622,939	-		PFLU_RS25150	0.50	+0.9
5,622,939	-		PFLU_RS25150	0.50	-0.3
5,622,944	+		PFLU_RS25150	0.52	-0.9
5,622,944	+		PFLU_RS25150	0.52	-1.3
5,622,944	+		PFLU_RS25150	0.52	+0.1
5,622,944	+		PFLU_RS25150	0.52	-1.2
5,622,944	+		PFLU_RS25150	0.52	+1.0
5,622,945	-		PFLU_RS25150	0.52	-0.7
5,622,945	-		PFLU_RS25150	0.52	-0.4
5,622,945	-		PFLU_RS25150	0.52	-0.1
5,622,945	-		PFLU_RS25150	0.52	-0.1
5,622,945	-		PFLU_RS25150	0.52	+0.5
5,622,961	+		PFLU_RS25150	0.58	-1.2
5,623,042	+		PFLU_RS25150	0.84	+0.7
5,623,043	-		PFLU_RS25150	0.84	+0.1
5,623,057	+		PFLU_RS25150	0.89	-1.0
5,623,057	+		PFLU_RS25150	0.89	+0.1
5,623,057	+		PFLU_RS25150	0.89	+1.3
5,623,057	+		PFLU_RS25150	0.89	-0.2
5,623,057	+		PFLU_RS25150	0.89	+1.1
5,623,057	+		PFLU_RS25150	0.89	+0.2
5,623,058	-		PFLU_RS25150	0.89	-0.6
5,623,058	-		PFLU_RS25150	0.89	-0.5
5,623,058	-		PFLU_RS25150	0.89	-0.6
5,623,058	-		PFLU_RS25150	0.89	+0.9
5,623,085	-				-0.2
5,623,085	-				-1.3
5,623,129	+				-0.4
5,623,129	+				-0.7
5,623,130	-				-0.2
5,623,130	-				+0.1
5,623,172	+				-0.6
5,623,172	+				+0.2
5,623,172	+				+0.9
5,623,172	+				+1.1
5,623,172	+				+1.1
5,623,172	+				-0.9
5,623,172	+				-0.1
5,623,172	+				+0.6
5,623,172	+				-0.9
5,623,172	+				+0.4
5,623,172	+				-0.9
5,623,172	+				+0.6
5,623,172	+				+0.6
5,623,172	+				-0.1
5,623,172	+				+0.2
5,623,172	+				-2.1
5,623,172	+				-1.5
5,623,172	+				+0.7
5,623,172	+				-0.9
5,623,172	+				+0.2
5,623,173	-				-2.1
5,623,173	-				+0.1
5,623,173	-				-0.4
5,623,173	-				-0.3
5,623,173	-				-0.2
5,623,173	-				-0.2
5,623,173	-				-0.1
5,623,173	-				+1.1
5,623,173	-				-0.4
5,623,173	-				+0.9
5,623,173	-				+0.1
5,623,173	-				-0.5
5,623,173	-				+0.9
5,623,208	+				+1.5
5,623,208	+				-1.5
5,623,208	+				-0.4
5,623,208	+				-0.8
5,623,208	+				+0.2
5,623,208	+				+1.0
5,623,208	+				-0.8
5,623,208	+				-0.5
5,623,208	+				-1.5
5,623,208	+				+2.4
5,623,208	+				-2.8
5,623,208	+				-0.5
5,623,208	+				+0.9
5,623,209	-				+0.9
5,623,209	-				-0.0
5,623,209	-				+1.4
5,623,209	-				-0.3
5,623,209	-				+1.1
5,623,292	+				-0.6
5,623,292	+				+1.4
5,623,293	-				-0.2
5,623,509	+		PFLU_RS25155	0.22	-0.7
5,623,509	+		PFLU_RS25155	0.22	+0.6
5,623,509	+		PFLU_RS25155	0.22	-0.2
5,623,509	+		PFLU_RS25155	0.22	+1.7
5,623,510	-		PFLU_RS25155	0.22	+0.8
5,623,510	-		PFLU_RS25155	0.22	-0.1
5,623,510	-		PFLU_RS25155	0.22	+0.0
5,623,539	+		PFLU_RS25155	0.25	+1.3
5,623,539	+		PFLU_RS25155	0.25	-1.2
5,623,539	+		PFLU_RS25155	0.25	-0.2
5,623,539	+		PFLU_RS25155	0.25	-1.9
5,623,539	+		PFLU_RS25155	0.25	+0.4
5,623,539	+		PFLU_RS25155	0.25	-0.5
5,623,539	+		PFLU_RS25155	0.25	-2.5
5,623,540	-		PFLU_RS25155	0.25	+1.3
5,623,563	+		PFLU_RS25155	0.28	-0.9
5,623,564	-		PFLU_RS25155	0.28	-0.8
5,623,575	+		PFLU_RS25155	0.29	+1.3
5,623,602	+		PFLU_RS25155	0.31	+0.7
5,623,602	+		PFLU_RS25155	0.31	+1.8
5,623,602	+		PFLU_RS25155	0.31	+0.7
5,623,602	+		PFLU_RS25155	0.31	-0.5
5,623,603	-		PFLU_RS25155	0.32	-0.3
5,623,603	-		PFLU_RS25155	0.32	-1.4
5,623,603	-		PFLU_RS25155	0.32	-0.3
5,623,603	-		PFLU_RS25155	0.32	+0.3
5,623,603	-		PFLU_RS25155	0.32	-0.0
5,623,626	+		PFLU_RS25155	0.34	+0.5
5,623,627	-		PFLU_RS25155	0.34	-0.6
5,623,640	+		PFLU_RS25155	0.35	+0.1
5,623,685	+		PFLU_RS25155	0.40	-0.7
5,623,685	+		PFLU_RS25155	0.40	+0.3
5,623,934	+		PFLU_RS25155	0.64	+0.6
5,624,254	-				+1.2
5,624,254	-				-0.5
5,624,292	+				+1.3
5,624,292	+				+1.3
5,624,292	+				-1.2
5,624,292	+				+0.3
5,624,293	-				+0.1
5,624,293	-				-1.8
5,624,293	-				+0.7
5,624,293	-				-0.9
5,624,293	-				-0.3
5,624,293	-				-1.5
5,624,293	-				+0.7
5,624,326	+				+0.2
5,624,327	-				-1.5
5,624,419	+		PFLU_RS25160	0.11	-0.2
5,624,419	+		PFLU_RS25160	0.11	+0.3
5,624,419	+		PFLU_RS25160	0.11	-0.1
5,624,419	+		PFLU_RS25160	0.11	-1.4
5,624,419	+		PFLU_RS25160	0.11	+0.3
5,624,419	+		PFLU_RS25160	0.11	-1.4
5,624,419	+		PFLU_RS25160	0.11	+0.4
5,624,420	-		PFLU_RS25160	0.11	-0.7
5,624,420	-		PFLU_RS25160	0.11	+0.6
5,624,420	-		PFLU_RS25160	0.11	-0.9
5,624,420	-		PFLU_RS25160	0.11	+1.8
5,624,420	-		PFLU_RS25160	0.11	+0.9
5,624,478	-		PFLU_RS25160	0.17	-0.2
5,624,483	-		PFLU_RS25160	0.17	+0.2
5,624,637	-		PFLU_RS25160	0.32	+0.1
5,624,725	+		PFLU_RS25160	0.41	-0.1
5,624,818	+		PFLU_RS25160	0.50	+0.8
5,624,818	+		PFLU_RS25160	0.50	-0.7
5,624,818	+		PFLU_RS25160	0.50	-0.9
5,624,842	+		PFLU_RS25160	0.52	-0.2
5,624,843	-		PFLU_RS25160	0.52	+0.7
5,624,959	+		PFLU_RS25160	0.63	+0.2
5,624,959	+		PFLU_RS25160	0.63	+0.5
5,624,959	+		PFLU_RS25160	0.63	+0.1
5,624,959	+		PFLU_RS25160	0.63	+1.1
5,624,959	+		PFLU_RS25160	0.63	+2.1
5,624,959	+		PFLU_RS25160	0.63	-0.3
5,624,959	+		PFLU_RS25160	0.63	-0.9
5,624,959	+		PFLU_RS25160	0.63	+0.2
5,624,960	-		PFLU_RS25160	0.63	-1.1
5,624,960	-		PFLU_RS25160	0.63	+1.5
5,624,960	-		PFLU_RS25160	0.63	+0.7
5,624,960	-		PFLU_RS25160	0.63	+0.9
5,624,960	-		PFLU_RS25160	0.63	+0.5
5,624,960	-		PFLU_RS25160	0.63	+1.3
5,624,960	-		PFLU_RS25160	0.63	+1.3
5,624,962	+		PFLU_RS25160	0.64	-1.5
5,624,962	+		PFLU_RS25160	0.64	+0.0
5,624,962	+		PFLU_RS25160	0.64	-0.1
5,624,962	+		PFLU_RS25160	0.64	-1.2
5,624,962	+		PFLU_RS25160	0.64	+0.6
5,624,962	+		PFLU_RS25160	0.64	-0.2
5,624,963	-		PFLU_RS25160	0.64	+0.4
5,624,963	-		PFLU_RS25160	0.64	+1.6
5,624,963	-		PFLU_RS25160	0.64	+0.8
5,624,963	-		PFLU_RS25160	0.64	+0.7
5,624,963	-		PFLU_RS25160	0.64	-0.7
5,624,963	-		PFLU_RS25160	0.64	+0.9
5,624,963	-		PFLU_RS25160	0.64	+0.6