Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS12385

Experiment: R2A with D-Cycloserine 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with D-Cycloserine 0.12 mg/ml
3,087,057	+		CA265_RS12380	0.65	-0.7
3,087,058	-		CA265_RS12380	0.65	-0.2
3,087,227	+		CA265_RS12380	0.73	+0.5
3,087,228	-		CA265_RS12380	0.73	+1.2
3,087,228	-		CA265_RS12380	0.73	+0.6
3,087,242	+		CA265_RS12380	0.74	-1.1
3,087,300	+		CA265_RS12380	0.76	-0.7
3,087,531	-		CA265_RS12380	0.87	-0.4
3,087,532	+		CA265_RS12380	0.87	-0.2
3,087,543	+		CA265_RS12380	0.87	-0.1
3,087,543	+		CA265_RS12380	0.87	-1.3
3,087,544	-		CA265_RS12380	0.87	+0.8
3,087,578	+		CA265_RS12380	0.89	-0.2
3,087,630	-				+0.4
3,087,818	+				-0.4
3,087,819	-				-0.2
3,087,822	-				-0.3
3,087,826	+				+0.9
3,087,827	-				+0.9
3,087,827	-				+0.7
3,087,831	+				+0.2
3,087,832	-				+0.5
3,087,838	-				+0.8
3,087,839	+				-0.8
3,087,849	+				+0.2
3,087,879	-				+0.9
3,087,915	-				-1.0
3,087,989	+				+0.2
3,088,020	-				+0.1
3,088,020	-				-0.1
3,088,031	+				+0.3
3,088,032	-				+0.0
3,088,088	+				+0.2
3,088,088	+				-0.1
3,088,089	-				-0.0
3,088,125	+				-0.2
3,088,200	-		CA265_RS12385	0.17	-0.3
3,088,200	-		CA265_RS12385	0.17	+0.3
3,088,203	+		CA265_RS12385	0.17	+0.2
3,088,203	+		CA265_RS12385	0.17	+0.2
3,088,204	-		CA265_RS12385	0.17	+0.5
3,088,303	+		CA265_RS12385	0.27	+0.2
3,088,303	+		CA265_RS12385	0.27	+0.0
3,088,364	+		CA265_RS12385	0.33	+0.7
3,088,365	-		CA265_RS12385	0.33	-0.2
3,088,373	+		CA265_RS12385	0.34	+0.3
3,088,393	+		CA265_RS12385	0.36	-1.7
3,088,410	+		CA265_RS12385	0.37	+0.1
3,088,416	+		CA265_RS12385	0.38	-1.4
3,088,502	-		CA265_RS12385	0.46	+0.5
3,088,515	+		CA265_RS12385	0.48	+0.7
3,088,515	+		CA265_RS12385	0.48	-0.7
3,088,516	-		CA265_RS12385	0.48	+0.7
3,088,636	-		CA265_RS12385	0.59	-0.0
3,088,673	+		CA265_RS12385	0.63	-0.2
3,088,738	+		CA265_RS12385	0.69	-0.0
3,088,738	+		CA265_RS12385	0.69	+0.0
3,088,739	-		CA265_RS12385	0.69	+0.6
3,088,789	-		CA265_RS12385	0.74	+0.3
3,088,799	+		CA265_RS12385	0.75	+0.4
3,088,799	+		CA265_RS12385	0.75	+0.3
3,088,800	-		CA265_RS12385	0.75	+0.7
3,088,842	-		CA265_RS12385	0.79	-1.1
3,088,844	-		CA265_RS12385	0.80	-0.4
3,088,971	+				+0.2
3,089,017	-				-0.2
3,089,052	-				+0.3
3,089,112	+		CA265_RS12390	0.10	+0.1
3,089,113	-		CA265_RS12390	0.11	-1.0
3,089,113	-		CA265_RS12390	0.11	-1.1
3,089,263	+		CA265_RS12390	0.27	+0.9
3,089,264	-		CA265_RS12390	0.27	+1.1
3,089,264	-		CA265_RS12390	0.27	+0.2
3,089,276	+		CA265_RS12390	0.28	-1.1
3,089,282	+		CA265_RS12390	0.29	+0.4
3,089,331	+		CA265_RS12390	0.34	+0.1
3,089,338	+		CA265_RS12390	0.35	-0.1
3,089,339	-		CA265_RS12390	0.35	-0.0
3,089,339	-		CA265_RS12390	0.35	-0.3
3,089,385	+		CA265_RS12390	0.40	+0.5
3,089,386	-		CA265_RS12390	0.40	+0.2
3,089,413	+		CA265_RS12390	0.43	-0.2
3,089,413	+		CA265_RS12390	0.43	-0.4
3,089,444	-		CA265_RS12390	0.46	-0.6
3,089,462	-		CA265_RS12390	0.48	+0.1
3,089,606	+		CA265_RS12390	0.63	-1.0
3,089,668	-		CA265_RS12390	0.70	-0.3
3,089,733	-		CA265_RS12390	0.77	+1.6
3,089,831	-		CA265_RS12390	0.87	+0.1
3,089,843	-		CA265_RS12390	0.89	-0.8
3,089,843	-		CA265_RS12390	0.89	-1.0
3,089,843	-		CA265_RS12390	0.89	-0.5
3,089,889	-				+0.3
3,089,989	+				-0.2