Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19590

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
2,179,195	-				-2.5
2,179,214	+				+0.2
2,179,214	+				+0.5
2,179,221	+				-0.4
2,179,221	+				+0.5
2,179,221	+				-0.0
2,179,221	+				+0.2
2,179,221	+				+0.6
2,179,222	-				+0.0
2,179,229	-				-0.6
2,179,229	-				-2.8
2,179,229	-				+1.2
2,179,229	-				+0.9
2,179,242	-				+0.9
2,179,245	-				+1.4
2,179,254	+				-0.4
2,179,260	-				-1.1
2,179,283	+				-0.4
2,179,337	-				+0.7
2,179,347	-				-0.2
2,179,351	-				-0.2
2,179,360	-				-0.6
2,179,417	+		BBR_RS19585	0.16	+0.6
2,179,417	+		BBR_RS19585	0.16	+0.7
2,179,420	-		BBR_RS19585	0.16	+1.1
2,179,421	+		BBR_RS19585	0.17	-0.9
2,179,515	-		BBR_RS19585	0.28	-0.8
2,179,515	-		BBR_RS19585	0.28	-0.7
2,179,516	+		BBR_RS19585	0.28	+0.5
2,179,516	+		BBR_RS19585	0.28	+0.4
2,179,516	+		BBR_RS19585	0.28	-0.4
2,179,516	+		BBR_RS19585	0.28	+0.7
2,179,523	+		BBR_RS19585	0.29	-0.0
2,179,524	-		BBR_RS19585	0.29	+0.1
2,179,524	-		BBR_RS19585	0.29	+0.7
2,179,553	+		BBR_RS19585	0.32	+0.9
2,179,554	+		BBR_RS19585	0.32	+1.3
2,179,596	-		BBR_RS19585	0.37	+1.1
2,179,627	+		BBR_RS19585	0.41	+2.0
2,179,627	+		BBR_RS19585	0.41	+1.9
2,179,627	+		BBR_RS19585	0.41	+1.0
2,179,635	-		BBR_RS19585	0.42	+1.4
2,179,635	-		BBR_RS19585	0.42	+1.0
2,179,653	-		BBR_RS19585	0.44	-0.2
2,179,668	+		BBR_RS19585	0.46	+0.8
2,179,682	-		BBR_RS19585	0.47	+1.0
2,179,695	-		BBR_RS19585	0.49	+1.0
2,179,704	+		BBR_RS19585	0.50	-1.9
2,179,711	+		BBR_RS19585	0.51	-0.8
2,179,711	+		BBR_RS19585	0.51	+1.1
2,179,717	+		BBR_RS19585	0.51	+0.9
2,179,717	-		BBR_RS19585	0.51	-0.8
2,179,719	-		BBR_RS19585	0.52	+1.0
2,179,748	-		BBR_RS19585	0.55	+0.6
2,179,758	+		BBR_RS19585	0.56	+0.5
2,179,761	-		BBR_RS19585	0.56	+1.2
2,179,761	-		BBR_RS19585	0.56	-0.1
2,179,795	+		BBR_RS19585	0.60	-0.4
2,179,795	+		BBR_RS19585	0.60	+0.5
2,179,829	-		BBR_RS19585	0.64	-0.7
2,179,831	+		BBR_RS19585	0.65	-0.3
2,179,841	-		BBR_RS19585	0.66	+1.2
2,179,846	+		BBR_RS19585	0.66	+1.8
2,179,866	+		BBR_RS19585	0.69	+1.6
2,179,869	-		BBR_RS19585	0.69	+1.2
2,179,874	-		BBR_RS19585	0.70	+0.0
2,179,874	-		BBR_RS19585	0.70	+1.0
2,179,874	-		BBR_RS19585	0.70	-1.6
2,179,878	+		BBR_RS19585	0.70	+0.4
2,179,878	+		BBR_RS19585	0.70	-2.4
2,179,878	+		BBR_RS19585	0.70	-2.1
2,179,878	+		BBR_RS19585	0.70	+0.8
2,179,878	+		BBR_RS19585	0.70	+0.4
2,179,886	-		BBR_RS19585	0.71	+0.4
2,179,888	+		BBR_RS19585	0.71	+0.9
2,179,890	+		BBR_RS19585	0.72	+1.3
2,179,896	-		BBR_RS19585	0.72	+1.2
2,179,916	-		BBR_RS19585	0.75	-0.2
2,179,918	-		BBR_RS19585	0.75	-3.4
2,179,928	-		BBR_RS19585	0.76	+0.7
2,179,928	-		BBR_RS19585	0.76	+0.2
2,179,932	+		BBR_RS19585	0.77	-0.8
2,179,936	+		BBR_RS19585	0.77	+1.3
2,179,944	+		BBR_RS19585	0.78	+0.8
2,179,946	-		BBR_RS19585	0.78	+0.1
2,179,968	+		BBR_RS19585	0.81	+1.9
2,180,001	+		BBR_RS19585	0.85	+1.4
2,180,005	+		BBR_RS19585	0.85	+1.1
2,180,011	+		BBR_RS19585	0.86	-0.9
2,180,041	+		BBR_RS19585	0.89	+0.7
2,180,049	-				-0.6
2,180,049	-				+0.2
2,180,056	-				+1.2
2,180,073	+				+1.0
2,180,081	-				+0.5
2,180,083	+				-0.6
2,180,083	+				+1.6
2,180,083	+				+1.3
2,180,091	-				+0.6
2,180,091	-				-0.0
2,180,091	-				-0.5
2,180,096	-				-0.4
2,180,102	-				+2.0
2,180,120	-				-1.4
2,180,120	-				+0.6
2,180,132	+				-0.4
2,180,137	+				+0.4
2,180,175	-				+0.8
2,180,178	+				+1.1
2,180,190	-				+0.8
2,180,228	+				-0.0
2,180,246	+				-0.4
2,180,246	+				-0.9
2,180,251	+				-0.6
2,180,251	+				+0.9
2,180,259	+		BBR_RS19590	0.11	+1.1
2,180,259	-		BBR_RS19590	0.11	+1.0
2,180,260	-		BBR_RS19590	0.11	-2.6
2,180,294	+		BBR_RS19590	0.16	-0.8
2,180,302	-		BBR_RS19590	0.17	+1.3
2,180,302	-		BBR_RS19590	0.17	+1.6
2,180,302	-		BBR_RS19590	0.17	-0.5
2,180,302	-		BBR_RS19590	0.17	+0.1
2,180,307	+		BBR_RS19590	0.18	+0.0
2,180,307	+		BBR_RS19590	0.18	+0.4
2,180,307	+		BBR_RS19590	0.18	-1.3
2,180,309	+		BBR_RS19590	0.18	-0.2
2,180,312	+		BBR_RS19590	0.19	-0.4
2,180,312	-		BBR_RS19590	0.19	-0.5
2,180,330	+		BBR_RS19590	0.21	+0.3
2,180,330	+		BBR_RS19590	0.21	-3.4
2,180,330	+		BBR_RS19590	0.21	-1.4
2,180,335	-		BBR_RS19590	0.22	+0.9
2,180,335	-		BBR_RS19590	0.22	+0.5
2,180,343	-		BBR_RS19590	0.23	-1.5
2,180,361	+		BBR_RS19590	0.26	-1.7
2,180,361	+		BBR_RS19590	0.26	-2.8
2,180,361	+		BBR_RS19590	0.26	-1.6
2,180,361	-		BBR_RS19590	0.26	-1.5
2,180,376	+		BBR_RS19590	0.28	-1.1
2,180,384	-		BBR_RS19590	0.29	-3.1
2,180,386	+		BBR_RS19590	0.29	-0.6
2,180,407	+		BBR_RS19590	0.32	-1.9
2,180,407	+		BBR_RS19590	0.32	-1.7
2,180,407	+		BBR_RS19590	0.32	-0.2
2,180,420	-		BBR_RS19590	0.34	-1.6
2,180,434	+		BBR_RS19590	0.36	+0.7
2,180,465	+		BBR_RS19590	0.41	-1.2
2,180,479	-		BBR_RS19590	0.43	-1.1
2,180,497	-		BBR_RS19590	0.46	-0.8
2,180,497	-		BBR_RS19590	0.46	+0.2
2,180,500	+		BBR_RS19590	0.46	+0.6
2,180,506	-		BBR_RS19590	0.47	+0.5
2,180,508	-		BBR_RS19590	0.47	+1.6
2,180,567	+		BBR_RS19590	0.56	-2.6
2,180,567	+		BBR_RS19590	0.56	-0.3
2,180,575	-		BBR_RS19590	0.57	-3.1
2,180,575	-		BBR_RS19590	0.57	-0.3
2,180,582	-		BBR_RS19590	0.58	-0.5
2,180,582	-		BBR_RS19590	0.58	-0.5
2,180,582	-		BBR_RS19590	0.58	-0.5
2,180,609	+		BBR_RS19590	0.62	+0.1
2,180,634	+		BBR_RS19590	0.65	-1.5
2,180,642	-		BBR_RS19590	0.67	+0.5
2,180,642	-		BBR_RS19590	0.67	-2.2
2,180,677	-		BBR_RS19590	0.72	-1.3
2,180,689	+		BBR_RS19590	0.73	+0.4
2,180,697	-		BBR_RS19590	0.74	-1.8
2,180,697	-		BBR_RS19590	0.74	+0.8
2,180,697	-		BBR_RS19590	0.74	+0.7
2,180,697	-		BBR_RS19590	0.74	+0.7
2,180,697	-		BBR_RS19590	0.74	+1.6
2,180,697	-		BBR_RS19590	0.74	-0.2
2,180,697	-		BBR_RS19590	0.74	-1.0
2,180,697	-		BBR_RS19590	0.74	-1.2
2,180,697	-		BBR_RS19590	0.74	+0.1
2,180,697	-		BBR_RS19590	0.74	-0.6
2,180,714	+		BBR_RS19590	0.77	-1.4
2,180,714	+		BBR_RS19590	0.77	+0.1
2,180,714	+		BBR_RS19590	0.77	-1.5
2,180,721	+		BBR_RS19590	0.78	+1.6
2,180,721	+		BBR_RS19590	0.78	+0.1
2,180,722	-		BBR_RS19590	0.78	-3.6
2,180,722	-		BBR_RS19590	0.78	+0.8
2,180,724	-		BBR_RS19590	0.78	+0.8
2,180,729	-		BBR_RS19590	0.79	-0.2
2,180,759	+		BBR_RS19590	0.83	+0.8
2,180,759	+		BBR_RS19590	0.83	-0.2
2,180,763	+		BBR_RS19590	0.84	-1.9
2,180,764	+		BBR_RS19590	0.84	-2.8
2,180,796	+		BBR_RS19590	0.89	-3.1
2,180,804	-				-0.2
2,180,806	+				+0.4
2,180,822	-				-1.1
2,180,822	-				+0.4
2,180,827	+				-0.4
2,180,827	+				-0.4
2,180,848	-				+0.1
2,180,852	-				+0.6
2,180,862	-				-3.4
2,180,867	-				-0.0
2,180,875	-				-0.0
2,180,875	-				-0.3
2,180,909	-				-0.6
2,180,941	+				-1.1
2,180,961	-		BBR_RS19595	0.11	-2.5
2,180,961	-		BBR_RS19595	0.11	-0.1
2,180,973	+		BBR_RS19595	0.12	-3.3
2,180,975	-		BBR_RS19595	0.12	+2.0
2,181,001	+		BBR_RS19595	0.16	-1.0
2,181,001	+		BBR_RS19595	0.16	-0.5
2,181,009	-		BBR_RS19595	0.17	+1.0
2,181,026	+		BBR_RS19595	0.19	+0.4
2,181,027	-		BBR_RS19595	0.19	-0.4
2,181,027	-		BBR_RS19595	0.19	-2.5
2,181,038	+		BBR_RS19595	0.20	-1.1
2,181,067	-		BBR_RS19595	0.24	-2.9
2,181,108	+		BBR_RS19595	0.29	-0.8
2,181,108	-		BBR_RS19595	0.29	+0.7
2,181,108	-		BBR_RS19595	0.29	-2.9
2,181,126	+		BBR_RS19595	0.32	-0.9
2,181,134	-		BBR_RS19595	0.33	+0.4
2,181,209	-		BBR_RS19595	0.42	-1.5
2,181,229	+		BBR_RS19595	0.45	-1.0
2,181,229	+		BBR_RS19595	0.45	+1.0
2,181,236	+		BBR_RS19595	0.46	-1.1
2,181,236	+		BBR_RS19595	0.46	-0.2
2,181,236	+		BBR_RS19595	0.46	-0.8
2,181,237	-		BBR_RS19595	0.46	-1.1
2,181,241	+		BBR_RS19595	0.46	-3.8
2,181,277	-		BBR_RS19595	0.51	-3.1
2,181,279	+		BBR_RS19595	0.51	-0.9
2,181,291	+		BBR_RS19595	0.52	-3.6
2,181,324	-		BBR_RS19595	0.57	-2.2
2,181,339	+		BBR_RS19595	0.59	-1.9
2,181,342	-		BBR_RS19595	0.59	-0.2
2,181,383	+		BBR_RS19595	0.64	+1.3
2,181,391	-		BBR_RS19595	0.65	-0.6
2,181,397	+		BBR_RS19595	0.66	-2.7
2,181,408	+		BBR_RS19595	0.67	-0.9
2,181,418	-		BBR_RS19595	0.69	-2.5
2,181,426	+		BBR_RS19595	0.70	-1.7
2,181,428	+		BBR_RS19595	0.70	-0.7
2,181,434	-		BBR_RS19595	0.71	-1.5
2,181,436	-		BBR_RS19595	0.71	-0.1
2,181,436	-		BBR_RS19595	0.71	-1.7
2,181,446	-		BBR_RS19595	0.72	-1.1
2,181,446	-		BBR_RS19595	0.72	+0.2
2,181,495	+		BBR_RS19595	0.78	-2.5
2,181,495	+		BBR_RS19595	0.78	+1.0
2,181,495	-		BBR_RS19595	0.78	-2.3
2,181,497	+		BBR_RS19595	0.79	+1.3
2,181,497	+		BBR_RS19595	0.79	-2.3
2,181,497	+		BBR_RS19595	0.79	-1.6
2,181,497	+		BBR_RS19595	0.79	+1.8
2,181,497	+		BBR_RS19595	0.79	+1.6
2,181,497	+		BBR_RS19595	0.79	-0.8
2,181,497	+		BBR_RS19595	0.79	+1.2
2,181,497	+		BBR_RS19595	0.79	-1.2
2,181,497	+		BBR_RS19595	0.79	-1.5
2,181,503	-		BBR_RS19595	0.79	-2.1
2,181,503	-		BBR_RS19595	0.79	-3.3
2,181,503	-		BBR_RS19595	0.79	-2.2
2,181,505	-		BBR_RS19595	0.80	+0.1
2,181,505	-		BBR_RS19595	0.80	-1.5
2,181,505	-		BBR_RS19595	0.80	-3.7
2,181,505	-		BBR_RS19595	0.80	-1.8
2,181,505	-		BBR_RS19595	0.80	-1.2
2,181,505	-		BBR_RS19595	0.80	+0.0
2,181,510	-		BBR_RS19595	0.80	-3.0
2,181,510	-		BBR_RS19595	0.80	-0.1
2,181,510	-		BBR_RS19595	0.80	+0.3
2,181,578	+		BBR_RS19595	0.89	-0.9
2,181,604	-				-3.1
2,181,631	-				+0.1
2,181,647	+				-0.9
2,181,647	+				-0.7
2,181,647	+				+0.2
2,181,647	+				-0.5
2,181,662	-				-3.1
2,181,667	+				-0.7
2,181,669	+				-2.8
2,181,669	-				+0.2
2,181,669	-				-3.3
2,181,682	+				-1.4
2,181,685	-				-0.0
2,181,692	+				-1.3
2,181,700	+				+1.8
2,181,700	+				-3.7
2,181,700	+				-2.0
2,181,700	-				-0.1
2,181,708	-				+0.1
2,181,708	-				-1.0
2,181,717	-				-1.3
2,181,726	-				-1.6
2,181,728	+				-2.1
2,181,736	-				-1.1
2,181,781	-				+0.5
2,181,783	+				-0.7
2,181,783	+				-1.7
2,181,783	+				-1.0
2,181,849	+		BBR_RS19600	0.17	+1.0
2,181,849	+		BBR_RS19600	0.17	-2.8
2,181,849	+		BBR_RS19600	0.17	+0.2
2,181,857	-		BBR_RS19600	0.18	+0.6