Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17935

Experiment: CDM1 without Adenine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Adenine
1,809,345	+				+1.0
1,809,349	+				+1.4
1,809,355	-				-1.1
1,809,384	+				-2.5
1,809,416	-				+0.3
1,809,426	+				+0.4
1,809,464	+		BBR_RS17930	0.15	-1.5
1,809,499	-		BBR_RS17930	0.22	-0.9
1,809,511	-		BBR_RS17930	0.24	+0.6
1,809,550	+		BBR_RS17930	0.32	-0.3
1,809,550	-		BBR_RS17930	0.32	-1.3
1,809,589	+		BBR_RS17930	0.39	+0.1
1,809,621	-		BBR_RS17930	0.45	-2.1
1,809,636	-		BBR_RS17930	0.48	-0.4
1,809,650	-		BBR_RS17930	0.51	-0.1
1,809,652	+		BBR_RS17930	0.51	-1.2
1,809,652	+		BBR_RS17930	0.51	+0.1
1,809,652	+		BBR_RS17930	0.51	-0.7
1,809,660	-		BBR_RS17930	0.53	-1.2
1,809,674	-		BBR_RS17930	0.55	+1.1
1,809,769	+		BBR_RS17930	0.74	-0.6
1,809,769	+		BBR_RS17930	0.74	-0.7
1,809,786	-		BBR_RS17930	0.77	+1.5
1,809,804	+		BBR_RS17930	0.80	+0.2
1,809,808	+		BBR_RS17930	0.81	-1.1
1,809,830	+		BBR_RS17930	0.85	+0.5
1,809,835	+		BBR_RS17930	0.86	+0.8
1,809,868	-				-1.2
1,809,869	-				+0.5
1,809,869	-				-1.0
1,809,869	-				-2.6
1,809,869	-				-0.6
1,809,885	+				+1.5
1,809,896	+				+0.2
1,809,904	-				-1.1
1,809,906	+				+0.2
1,809,928	+				+0.6
1,809,948	-				-0.2
1,809,948	-				+0.9
1,809,990	-				+0.8
1,809,996	+				+0.7
1,810,016	-				-0.0
1,810,035	-				-0.2
1,810,081	+				-0.6
1,810,081	+				+1.1
1,810,081	+				-2.8
1,810,089	-				+0.3
1,810,089	-				-3.4
1,810,091	-				-1.7
1,810,123	+				-0.7
1,810,148	-				+0.9
1,810,213	-				+1.1
1,810,296	-		BBR_RS17935	0.14	-0.6
1,810,326	+		BBR_RS17935	0.15	-2.5
1,810,334	-		BBR_RS17935	0.16	+0.9
1,810,377	+		BBR_RS17935	0.18	-1.1
1,810,396	+		BBR_RS17935	0.19	-0.2
1,810,396	+		BBR_RS17935	0.19	-3.7
1,810,403	+		BBR_RS17935	0.19	-0.2
1,810,411	-		BBR_RS17935	0.20	+0.4
1,810,463	-		BBR_RS17935	0.23	-0.2
1,810,463	-		BBR_RS17935	0.23	+0.5
1,810,476	-		BBR_RS17935	0.23	-1.3
1,810,497	-		BBR_RS17935	0.24	+0.8
1,810,539	+		BBR_RS17935	0.27	-0.5
1,810,558	-		BBR_RS17935	0.28	-3.5
1,810,564	+		BBR_RS17935	0.28	-2.2
1,810,577	-		BBR_RS17935	0.29	-2.7
1,810,577	-		BBR_RS17935	0.29	-0.5
1,810,584	+		BBR_RS17935	0.29	-0.1
1,810,592	-		BBR_RS17935	0.30	-2.1
1,810,600	-		BBR_RS17935	0.30	-3.2
1,810,600	-		BBR_RS17935	0.30	-2.4
1,810,610	-		BBR_RS17935	0.31	+0.9
1,810,610	-		BBR_RS17935	0.31	+0.5
1,810,711	-		BBR_RS17935	0.36	-0.1
1,810,716	-		BBR_RS17935	0.36	+0.4
1,810,720	+		BBR_RS17935	0.36	-1.0
1,810,742	-		BBR_RS17935	0.38	-0.5
1,810,761	+		BBR_RS17935	0.39	+1.7
1,810,797	+		BBR_RS17935	0.41	-1.5
1,810,805	-		BBR_RS17935	0.41	-0.5
1,810,825	+		BBR_RS17935	0.42	-2.6
1,810,825	+		BBR_RS17935	0.42	-2.4
1,810,920	+		BBR_RS17935	0.47	-0.2
1,810,920	+		BBR_RS17935	0.47	-1.9
1,810,920	+		BBR_RS17935	0.47	-2.6
1,810,920	+		BBR_RS17935	0.47	+0.7
1,810,920	+		BBR_RS17935	0.47	-2.5
1,810,928	-		BBR_RS17935	0.48	-0.8
1,810,928	-		BBR_RS17935	0.48	+0.5
1,810,928	-		BBR_RS17935	0.48	-0.4
1,810,928	-		BBR_RS17935	0.48	-0.2
1,810,928	-		BBR_RS17935	0.48	-2.7
1,810,955	+		BBR_RS17935	0.49	-1.7
1,811,012	-		BBR_RS17935	0.52	+0.2
1,811,012	-		BBR_RS17935	0.52	-2.3
1,811,042	-		BBR_RS17935	0.54	-0.4
1,811,066	+		BBR_RS17935	0.55	-3.3
1,811,079	+		BBR_RS17935	0.56	-2.1
1,811,116	+		BBR_RS17935	0.58	-1.2
1,811,116	+		BBR_RS17935	0.58	-0.2
1,811,116	+		BBR_RS17935	0.58	-0.1
1,811,154	+		BBR_RS17935	0.60	-1.4
1,811,163	+		BBR_RS17935	0.60	+0.5
1,811,163	+		BBR_RS17935	0.60	-2.6
1,811,164	-		BBR_RS17935	0.60	-2.2
1,811,171	-		BBR_RS17935	0.61	-2.5
1,811,171	-		BBR_RS17935	0.61	-1.9
1,811,179	-		BBR_RS17935	0.61	-0.7
1,811,208	+		BBR_RS17935	0.63	-1.1
1,811,208	+		BBR_RS17935	0.63	-2.6
1,811,213	+		BBR_RS17935	0.63	-0.3
1,811,216	+		BBR_RS17935	0.63	-3.6
1,811,221	-		BBR_RS17935	0.63	-0.3
1,811,224	-		BBR_RS17935	0.64	+0.0
1,811,423	+		BBR_RS17935	0.74	-3.4
1,811,428	+		BBR_RS17935	0.75	+0.4
1,811,428	+		BBR_RS17935	0.75	-1.4
1,811,431	-		BBR_RS17935	0.75	-2.7
1,811,431	-		BBR_RS17935	0.75	-0.5
1,811,431	-		BBR_RS17935	0.75	+1.0
1,811,431	-		BBR_RS17935	0.75	+0.1
1,811,451	+		BBR_RS17935	0.76	+1.8
1,811,472	+		BBR_RS17935	0.77	+0.0
1,811,500	+		BBR_RS17935	0.78	-1.7
1,811,500	+		BBR_RS17935	0.78	+1.0
1,811,533	-		BBR_RS17935	0.80	-1.5
1,811,586	+		BBR_RS17935	0.83	-1.7
1,811,591	+		BBR_RS17935	0.83	-3.0
1,811,591	+		BBR_RS17935	0.83	-0.1
1,811,591	+		BBR_RS17935	0.83	-3.7
1,811,599	-		BBR_RS17935	0.84	-1.5
1,811,606	+		BBR_RS17935	0.84	+0.5
1,811,609	-		BBR_RS17935	0.84	-3.0
1,811,637	+		BBR_RS17935	0.86	+1.1
1,811,668	+		BBR_RS17935	0.88	+0.1
1,811,670	+		BBR_RS17935	0.88	+0.6
1,811,671	-		BBR_RS17935	0.88	-1.2
1,811,671	-		BBR_RS17935	0.88	-1.7
1,811,678	-		BBR_RS17935	0.88	-0.5
1,811,710	-		BBR_RS17935	0.90	-2.5
1,811,756	+				+0.3
1,811,803	+				+1.1
1,811,811	-				-3.8
1,811,813	-				+0.1
1,811,835	+				-1.5
1,811,835	-				-0.2
1,811,848	+				-1.7
1,811,873	-				-2.5
1,811,921	+				-0.1
1,811,964	-				-1.2
1,811,964	-				-0.0
1,811,965	+				+1.2
1,811,973	-				+0.6
1,812,028	+				-2.0
1,812,028	+				-1.9
1,812,035	-				+0.3
1,812,035	-				+1.6
1,812,036	-				+0.9
1,812,036	-				-2.5
1,812,036	-				+0.5
1,812,096	+		BBR_RS17940	0.12	+0.9
1,812,110	+		BBR_RS17940	0.15	-0.3
1,812,137	-		BBR_RS17940	0.20	-1.1
1,812,144	-		BBR_RS17940	0.21	-3.4
1,812,148	-		BBR_RS17940	0.22	+1.4
1,812,149	-		BBR_RS17940	0.22	+0.9
1,812,177	+		BBR_RS17940	0.28	-1.5
1,812,200	-		BBR_RS17940	0.32	-1.0
1,812,239	+		BBR_RS17940	0.40	+2.0
1,812,242	-		BBR_RS17940	0.41	+0.9
1,812,247	-		BBR_RS17940	0.42	-0.5
1,812,247	-		BBR_RS17940	0.42	-2.4
1,812,282	-		BBR_RS17940	0.49	-1.6
1,812,378	+		BBR_RS17940	0.67	+0.4
1,812,378	+		BBR_RS17940	0.67	-1.0
1,812,378	+		BBR_RS17940	0.67	-2.9
1,812,386	-		BBR_RS17940	0.69	-1.3
1,812,386	-		BBR_RS17940	0.69	-0.8
1,812,386	-		BBR_RS17940	0.69	+0.2
1,812,386	-		BBR_RS17940	0.69	-0.5
1,812,386	-		BBR_RS17940	0.69	+0.6
1,812,449	+		BBR_RS17940	0.81	-0.4
1,812,489	+		BBR_RS17940	0.89	-2.1
1,812,536	-				+1.6
1,812,548	+				-1.6
1,812,548	+				-0.2
1,812,556	-				-3.1
1,812,698	+				+0.1
1,812,706	-				+0.9
1,812,808	+		BBR_RS17945	0.18	-2.6
1,812,852	+		BBR_RS17945	0.28	-2.5
1,812,852	+		BBR_RS17945	0.28	-2.5
1,812,897	+		BBR_RS17945	0.39	+0.2