Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13885

Experiment: CDM1 without Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13875 and BBR_RS13880 are separated by 27 nucleotidesBBR_RS13880 and BBR_RS13885 are separated by 96 nucleotidesBBR_RS13885 and BBR_RS13890 overlap by 4 nucleotides BBR_RS13875: BBR_RS13875 - phenylalanine--tRNA ligase subunit beta, at 891,515 to 894,124 _RS13875 BBR_RS13880: BBR_RS13880 - hypothetical protein, at 894,152 to 894,808 _RS13880 BBR_RS13885: BBR_RS13885 - N-acetyl-gamma-glutamyl-phosphate reductase, at 894,905 to 895,999 _RS13885 BBR_RS13890: BBR_RS13890 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 895,996 to 897,171 _RS13890 Position (kb) 894 895 896Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 894.126 kb on - strandat 894.128 kb on + strandat 894.128 kb on - strandat 894.128 kb on - strandat 894.164 kb on + strandat 894.174 kb on - strandat 894.174 kb on - strandat 894.174 kb on - strandat 894.199 kb on - strandat 894.234 kb on - strand, within BBR_RS13880at 894.245 kb on - strand, within BBR_RS13880at 894.245 kb on - strand, within BBR_RS13880at 894.296 kb on + strand, within BBR_RS13880at 894.306 kb on - strand, within BBR_RS13880at 894.345 kb on - strand, within BBR_RS13880at 894.384 kb on - strand, within BBR_RS13880at 894.389 kb on + strand, within BBR_RS13880at 894.397 kb on - strand, within BBR_RS13880at 894.413 kb on + strand, within BBR_RS13880at 894.448 kb on + strand, within BBR_RS13880at 894.483 kb on - strand, within BBR_RS13880at 894.528 kb on - strand, within BBR_RS13880at 894.557 kb on - strand, within BBR_RS13880at 894.557 kb on - strand, within BBR_RS13880at 894.568 kb on + strand, within BBR_RS13880at 894.568 kb on + strand, within BBR_RS13880at 894.604 kb on - strand, within BBR_RS13880at 894.653 kb on - strand, within BBR_RS13880at 894.673 kb on + strand, within BBR_RS13880at 894.682 kb on + strand, within BBR_RS13880at 894.682 kb on + strand, within BBR_RS13880at 894.692 kb on - strand, within BBR_RS13880at 894.698 kb on - strand, within BBR_RS13880at 894.777 kb on - strandat 894.798 kb on + strandat 894.803 kb on + strandat 894.803 kb on + strandat 894.808 kb on + strandat 894.811 kb on - strandat 894.811 kb on - strandat 894.833 kb on + strandat 894.909 kb on - strandat 894.949 kb on - strandat 894.999 kb on + strandat 895.087 kb on + strand, within BBR_RS13885at 895.087 kb on + strand, within BBR_RS13885at 895.092 kb on + strand, within BBR_RS13885at 895.095 kb on - strand, within BBR_RS13885at 895.095 kb on - strand, within BBR_RS13885at 895.156 kb on + strand, within BBR_RS13885at 895.193 kb on + strand, within BBR_RS13885at 895.281 kb on + strand, within BBR_RS13885at 895.283 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.342 kb on + strand, within BBR_RS13885at 895.344 kb on - strand, within BBR_RS13885at 895.371 kb on + strand, within BBR_RS13885at 895.383 kb on + strand, within BBR_RS13885at 895.386 kb on + strand, within BBR_RS13885at 895.415 kb on + strand, within BBR_RS13885at 895.421 kb on + strand, within BBR_RS13885at 895.429 kb on - strand, within BBR_RS13885at 895.465 kb on - strand, within BBR_RS13885at 895.468 kb on + strand, within BBR_RS13885at 895.542 kb on - strand, within BBR_RS13885at 895.542 kb on - strand, within BBR_RS13885at 895.600 kb on + strand, within BBR_RS13885at 895.627 kb on + strand, within BBR_RS13885at 895.663 kb on + strand, within BBR_RS13885at 895.663 kb on + strand, within BBR_RS13885at 895.681 kb on - strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.708 kb on + strand, within BBR_RS13885at 895.716 kb on - strand, within BBR_RS13885at 895.716 kb on - strand, within BBR_RS13885at 895.723 kb on + strand, within BBR_RS13885at 895.763 kb on + strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.771 kb on - strand, within BBR_RS13885at 895.794 kb on - strand, within BBR_RS13885at 895.806 kb on + strand, within BBR_RS13885at 895.848 kb on - strand, within BBR_RS13885at 895.894 kb on + strandat 895.914 kb on - strandat 895.949 kb on - strandat 895.973 kb on - strandat 895.983 kb on - strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.986 kb on + strandat 895.988 kb on + strandat 895.988 kb on + strandat 895.989 kb on - strandat 895.989 kb on - strandat 896.062 kb on + strandat 896.094 kb on - strandat 896.112 kb on + strandat 896.141 kb on + strand, within BBR_RS13890at 896.141 kb on + strand, within BBR_RS13890at 896.144 kb on - strand, within BBR_RS13890at 896.149 kb on + strand, within BBR_RS13890at 896.149 kb on + strand, within BBR_RS13890at 896.152 kb on + strand, within BBR_RS13890at 896.163 kb on + strand, within BBR_RS13890at 896.170 kb on + strand, within BBR_RS13890at 896.223 kb on + strand, within BBR_RS13890at 896.231 kb on + strand, within BBR_RS13890at 896.236 kb on - strand, within BBR_RS13890at 896.251 kb on - strand, within BBR_RS13890at 896.265 kb on + strand, within BBR_RS13890at 896.265 kb on + strand, within BBR_RS13890at 896.304 kb on + strand, within BBR_RS13890at 896.306 kb on + strand, within BBR_RS13890at 896.321 kb on + strand, within BBR_RS13890at 896.326 kb on + strand, within BBR_RS13890at 896.409 kb on + strand, within BBR_RS13890at 896.414 kb on + strand, within BBR_RS13890at 896.425 kb on + strand, within BBR_RS13890at 896.462 kb on + strand, within BBR_RS13890at 896.462 kb on + strand, within BBR_RS13890at 896.464 kb on + strand, within BBR_RS13890at 896.472 kb on + strand, within BBR_RS13890at 896.506 kb on + strand, within BBR_RS13890at 896.513 kb on - strand, within BBR_RS13890at 896.540 kb on + strand, within BBR_RS13890at 896.550 kb on - strand, within BBR_RS13890at 896.569 kb on + strand, within BBR_RS13890at 896.574 kb on + strand, within BBR_RS13890at 896.574 kb on + strand, within BBR_RS13890at 896.579 kb on + strand, within BBR_RS13890at 896.584 kb on + strand, within BBR_RS13890at 896.589 kb on + strand, within BBR_RS13890at 896.600 kb on + strand, within BBR_RS13890at 896.604 kb on + strand, within BBR_RS13890at 896.661 kb on + strand, within BBR_RS13890at 896.720 kb on + strand, within BBR_RS13890at 896.839 kb on + strand, within BBR_RS13890at 896.845 kb on + strand, within BBR_RS13890at 896.902 kb on + strand, within BBR_RS13890at 896.920 kb on + strand, within BBR_RS13890at 896.930 kb on + strand, within BBR_RS13890at 896.976 kb on + strand, within BBR_RS13890

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Adenine
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894,126 - -1.0
894,128 + +1.6
894,128 - +0.3
894,128 - +0.1
894,164 + +2.0
894,174 - -2.2
894,174 - -0.3
894,174 - +0.2
894,199 - -2.7
894,234 - BBR_RS13880 0.12 -1.1
894,245 - BBR_RS13880 0.14 -1.0
894,245 - BBR_RS13880 0.14 -2.3
894,296 + BBR_RS13880 0.22 -2.2
894,306 - BBR_RS13880 0.23 -1.2
894,345 - BBR_RS13880 0.29 +0.3
894,384 - BBR_RS13880 0.35 -1.6
894,389 + BBR_RS13880 0.36 -1.8
894,397 - BBR_RS13880 0.37 +0.3
894,413 + BBR_RS13880 0.40 -0.8
894,448 + BBR_RS13880 0.45 +0.2
894,483 - BBR_RS13880 0.50 +1.1
894,528 - BBR_RS13880 0.57 -1.0
894,557 - BBR_RS13880 0.62 -2.8
894,557 - BBR_RS13880 0.62 -0.2
894,568 + BBR_RS13880 0.63 +0.1
894,568 + BBR_RS13880 0.63 -2.2
894,604 - BBR_RS13880 0.69 -2.8
894,653 - BBR_RS13880 0.76 +1.1
894,673 + BBR_RS13880 0.79 -0.5
894,682 + BBR_RS13880 0.81 +1.8
894,682 + BBR_RS13880 0.81 +0.0
894,692 - BBR_RS13880 0.82 +0.3
894,698 - BBR_RS13880 0.83 +0.7
894,777 - -2.8
894,798 + +0.7
894,803 + -0.7
894,803 + +2.4
894,808 + -0.2
894,811 - +1.6
894,811 - +0.1
894,833 + +1.8
894,909 - +1.6
894,949 - -0.0
894,999 + +1.5
895,087 + BBR_RS13885 0.17 +2.6
895,087 + BBR_RS13885 0.17 +1.8
895,092 + BBR_RS13885 0.17 +2.2
895,095 - BBR_RS13885 0.17 -1.6
895,095 - BBR_RS13885 0.17 -1.8
895,156 + BBR_RS13885 0.23 +1.5
895,193 + BBR_RS13885 0.26 +2.8
895,281 + BBR_RS13885 0.34 +2.5
895,283 + BBR_RS13885 0.35 +2.5
895,342 + BBR_RS13885 0.40 +2.9
895,342 + BBR_RS13885 0.40 +2.2
895,342 + BBR_RS13885 0.40 +3.0
895,344 - BBR_RS13885 0.40 +0.5
895,371 + BBR_RS13885 0.43 +2.0
895,383 + BBR_RS13885 0.44 +2.5
895,386 + BBR_RS13885 0.44 +2.9
895,415 + BBR_RS13885 0.47 +1.6
895,421 + BBR_RS13885 0.47 +1.9
895,429 - BBR_RS13885 0.48 +0.2
895,465 - BBR_RS13885 0.51 +1.5
895,468 + BBR_RS13885 0.51 +2.4
895,542 - BBR_RS13885 0.58 -0.2
895,542 - BBR_RS13885 0.58 -2.2
895,600 + BBR_RS13885 0.63 +4.0
895,627 + BBR_RS13885 0.66 +2.7
895,663 + BBR_RS13885 0.69 +1.4
895,663 + BBR_RS13885 0.69 +2.5
895,681 - BBR_RS13885 0.71 +0.3
895,708 + BBR_RS13885 0.73 +3.9
895,708 + BBR_RS13885 0.73 +2.4
895,708 + BBR_RS13885 0.73 +3.2
895,708 + BBR_RS13885 0.73 +3.4
895,716 - BBR_RS13885 0.74 +0.8
895,716 - BBR_RS13885 0.74 +0.7
895,723 + BBR_RS13885 0.75 +1.8
895,763 + BBR_RS13885 0.78 +1.0
895,771 - BBR_RS13885 0.79 +1.5
895,771 - BBR_RS13885 0.79 +0.8
895,771 - BBR_RS13885 0.79 +1.5
895,794 - BBR_RS13885 0.81 +2.7
895,806 + BBR_RS13885 0.82 +2.8
895,848 - BBR_RS13885 0.86 +1.8
895,894 + +2.1
895,914 - +2.0
895,949 - +1.1
895,973 - +5.2
895,983 - +0.1
895,986 + +2.2
895,986 + +2.6
895,986 + +2.6
895,986 + +2.1
895,986 + +1.8
895,986 + +1.7
895,988 + +2.9
895,988 + +2.5
895,989 - -1.8
895,989 - -0.8
896,062 + +2.7
896,094 - +2.5
896,112 + -2.2
896,141 + BBR_RS13890 0.12 +3.0
896,141 + BBR_RS13890 0.12 +2.6
896,144 - BBR_RS13890 0.13 -1.0
896,149 + BBR_RS13890 0.13 +2.3
896,149 + BBR_RS13890 0.13 +3.8
896,152 + BBR_RS13890 0.13 +2.0
896,163 + BBR_RS13890 0.14 +3.2
896,170 + BBR_RS13890 0.15 +2.6
896,223 + BBR_RS13890 0.19 +2.1
896,231 + BBR_RS13890 0.20 +2.4
896,236 - BBR_RS13890 0.20 +1.0
896,251 - BBR_RS13890 0.22 +1.5
896,265 + BBR_RS13890 0.23 +1.6
896,265 + BBR_RS13890 0.23 +0.7
896,304 + BBR_RS13890 0.26 +2.7
896,306 + BBR_RS13890 0.26 +3.3
896,321 + BBR_RS13890 0.28 +2.4
896,326 + BBR_RS13890 0.28 +2.0
896,409 + BBR_RS13890 0.35 +1.6
896,414 + BBR_RS13890 0.36 +2.0
896,425 + BBR_RS13890 0.36 +2.7
896,462 + BBR_RS13890 0.40 +3.0
896,462 + BBR_RS13890 0.40 +3.2
896,464 + BBR_RS13890 0.40 +1.3
896,472 + BBR_RS13890 0.40 +3.4
896,506 + BBR_RS13890 0.43 +2.6
896,513 - BBR_RS13890 0.44 +1.1
896,540 + BBR_RS13890 0.46 +2.8
896,550 - BBR_RS13890 0.47 +1.0
896,569 + BBR_RS13890 0.49 +2.2
896,574 + BBR_RS13890 0.49 +1.9
896,574 + BBR_RS13890 0.49 -0.0
896,579 + BBR_RS13890 0.50 +3.4
896,584 + BBR_RS13890 0.50 +1.0
896,589 + BBR_RS13890 0.50 +1.9
896,600 + BBR_RS13890 0.51 +2.5
896,604 + BBR_RS13890 0.52 +2.6
896,661 + BBR_RS13890 0.57 +0.8
896,720 + BBR_RS13890 0.62 +2.7
896,839 + BBR_RS13890 0.72 +1.7
896,845 + BBR_RS13890 0.72 +2.7
896,902 + BBR_RS13890 0.77 +2.2
896,920 + BBR_RS13890 0.79 +2.4
896,930 + BBR_RS13890 0.79 +1.6
896,976 + BBR_RS13890 0.83 +2.3

Or see this region's nucleotide sequence