Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13415

Experiment: CDM1 without Adenine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13410 and BBR_RS13415 are separated by 57 nucleotidesBBR_RS13415 and BBR_RS20775 are separated by 157 nucleotidesBBR_RS20775 and BBR_RS13420 are separated by 9 nucleotidesBBR_RS13420 and BBR_RS13425 are separated by 126 nucleotides BBR_RS13410: BBR_RS13410 - hypothetical protein, at 779,965 to 781,011 _RS13410 BBR_RS13415: BBR_RS13415 - hypothetical protein, at 781,069 to 781,701 _RS13415 BBR_RS20775: BBR_RS20775 - DUF4230 domain-containing protein, at 781,859 to 781,969 _RS20775 BBR_RS13420: BBR_RS13420 - DUF4230 domain-containing protein, at 781,979 to 782,266 _RS13420 BBR_RS13425: BBR_RS13425 - hypothetical protein, at 782,393 to 783,205 _RS13425 Position (kb) 781 782Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 780.069 kb on + strandat 780.162 kb on + strand, within BBR_RS13410at 780.170 kb on - strand, within BBR_RS13410at 780.196 kb on - strand, within BBR_RS13410at 780.196 kb on - strand, within BBR_RS13410at 780.197 kb on + strand, within BBR_RS13410at 780.197 kb on + strand, within BBR_RS13410at 780.253 kb on + strand, within BBR_RS13410at 780.253 kb on + strand, within BBR_RS13410at 780.307 kb on - strand, within BBR_RS13410at 780.371 kb on + strand, within BBR_RS13410at 780.391 kb on - strand, within BBR_RS13410at 780.391 kb on - strand, within BBR_RS13410at 780.422 kb on - strand, within BBR_RS13410at 780.422 kb on - strand, within BBR_RS13410at 780.443 kb on - strand, within BBR_RS13410at 780.447 kb on + strand, within BBR_RS13410at 780.447 kb on + strand, within BBR_RS13410at 780.511 kb on + strand, within BBR_RS13410at 780.511 kb on + strand, within BBR_RS13410at 780.552 kb on - strand, within BBR_RS13410at 780.555 kb on - strand, within BBR_RS13410at 780.599 kb on - strand, within BBR_RS13410at 780.650 kb on - strand, within BBR_RS13410at 780.659 kb on + strand, within BBR_RS13410at 780.660 kb on - strand, within BBR_RS13410at 780.663 kb on - strand, within BBR_RS13410at 780.672 kb on - strand, within BBR_RS13410at 780.674 kb on + strand, within BBR_RS13410at 780.674 kb on + strand, within BBR_RS13410at 780.710 kb on + strand, within BBR_RS13410at 780.712 kb on + strand, within BBR_RS13410at 780.712 kb on + strand, within BBR_RS13410at 780.722 kb on + strand, within BBR_RS13410at 780.786 kb on - strand, within BBR_RS13410at 780.870 kb on + strand, within BBR_RS13410at 780.883 kb on - strand, within BBR_RS13410at 780.895 kb on - strand, within BBR_RS13410at 780.895 kb on - strand, within BBR_RS13410at 780.895 kb on - strand, within BBR_RS13410at 780.980 kb on - strandat 781.027 kb on - strandat 781.034 kb on - strandat 781.107 kb on - strandat 781.138 kb on - strand, within BBR_RS13415at 781.156 kb on + strand, within BBR_RS13415at 781.164 kb on - strand, within BBR_RS13415at 781.182 kb on + strand, within BBR_RS13415at 781.182 kb on + strand, within BBR_RS13415at 781.192 kb on - strand, within BBR_RS13415at 781.244 kb on - strand, within BBR_RS13415at 781.254 kb on - strand, within BBR_RS13415at 781.269 kb on - strand, within BBR_RS13415at 781.281 kb on + strand, within BBR_RS13415at 781.297 kb on + strand, within BBR_RS13415at 781.297 kb on + strand, within BBR_RS13415at 781.305 kb on - strand, within BBR_RS13415at 781.305 kb on - strand, within BBR_RS13415at 781.305 kb on - strand, within BBR_RS13415at 781.305 kb on - strand, within BBR_RS13415at 781.305 kb on - strand, within BBR_RS13415at 781.341 kb on - strand, within BBR_RS13415at 781.367 kb on + strand, within BBR_RS13415at 781.408 kb on + strand, within BBR_RS13415at 781.408 kb on + strand, within BBR_RS13415at 781.408 kb on + strand, within BBR_RS13415at 781.413 kb on - strand, within BBR_RS13415at 781.416 kb on - strand, within BBR_RS13415at 781.416 kb on - strand, within BBR_RS13415at 781.572 kb on + strand, within BBR_RS13415at 781.597 kb on - strand, within BBR_RS13415at 781.599 kb on - strand, within BBR_RS13415at 781.599 kb on - strand, within BBR_RS13415at 781.599 kb on - strand, within BBR_RS13415at 781.628 kb on - strand, within BBR_RS13415at 781.681 kb on + strandat 781.681 kb on - strandat 781.683 kb on - strandat 781.701 kb on - strandat 781.713 kb on - strandat 781.728 kb on - strandat 781.737 kb on - strandat 781.763 kb on - strandat 781.765 kb on - strandat 781.778 kb on + strandat 781.791 kb on + strandat 781.791 kb on + strandat 781.817 kb on + strandat 781.830 kb on - strandat 781.861 kb on + strandat 781.900 kb on - strand, within BBR_RS20775at 781.941 kb on + strand, within BBR_RS20775at 781.941 kb on + strand, within BBR_RS20775at 782.070 kb on + strand, within BBR_RS13420at 782.139 kb on - strand, within BBR_RS13420at 782.155 kb on + strand, within BBR_RS13420at 782.179 kb on + strand, within BBR_RS13420at 782.210 kb on - strand, within BBR_RS13420at 782.242 kb on + strandat 782.247 kb on - strandat 782.260 kb on - strandat 782.339 kb on - strandat 782.408 kb on - strandat 782.417 kb on + strandat 782.424 kb on - strandat 782.445 kb on + strandat 782.499 kb on + strand, within BBR_RS13425at 782.499 kb on + strand, within BBR_RS13425at 782.556 kb on + strand, within BBR_RS13425at 782.676 kb on - strand, within BBR_RS13425at 782.676 kb on - strand, within BBR_RS13425

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Adenine
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780,069 + +0.4
780,162 + BBR_RS13410 0.19 +1.7
780,170 - BBR_RS13410 0.20 -1.4
780,196 - BBR_RS13410 0.22 -0.3
780,196 - BBR_RS13410 0.22 +0.3
780,197 + BBR_RS13410 0.22 -0.3
780,197 + BBR_RS13410 0.22 +0.3
780,253 + BBR_RS13410 0.28 -0.5
780,253 + BBR_RS13410 0.28 -2.4
780,307 - BBR_RS13410 0.33 +0.8
780,371 + BBR_RS13410 0.39 +2.3
780,391 - BBR_RS13410 0.41 -0.6
780,391 - BBR_RS13410 0.41 +0.3
780,422 - BBR_RS13410 0.44 -0.8
780,422 - BBR_RS13410 0.44 +0.3
780,443 - BBR_RS13410 0.46 +0.5
780,447 + BBR_RS13410 0.46 +0.7
780,447 + BBR_RS13410 0.46 -0.4
780,511 + BBR_RS13410 0.52 -2.9
780,511 + BBR_RS13410 0.52 -0.4
780,552 - BBR_RS13410 0.56 +0.0
780,555 - BBR_RS13410 0.56 -0.5
780,599 - BBR_RS13410 0.61 +1.3
780,650 - BBR_RS13410 0.65 +0.8
780,659 + BBR_RS13410 0.66 +0.3
780,660 - BBR_RS13410 0.66 -1.9
780,663 - BBR_RS13410 0.67 -0.2
780,672 - BBR_RS13410 0.68 -0.0
780,674 + BBR_RS13410 0.68 -2.7
780,674 + BBR_RS13410 0.68 +1.2
780,710 + BBR_RS13410 0.71 +0.1
780,712 + BBR_RS13410 0.71 +0.2
780,712 + BBR_RS13410 0.71 -3.1
780,722 + BBR_RS13410 0.72 -1.5
780,786 - BBR_RS13410 0.78 -0.6
780,870 + BBR_RS13410 0.86 +1.0
780,883 - BBR_RS13410 0.88 -1.7
780,895 - BBR_RS13410 0.89 -1.9
780,895 - BBR_RS13410 0.89 -1.5
780,895 - BBR_RS13410 0.89 +1.5
780,980 - -2.8
781,027 - +1.8
781,034 - -0.4
781,107 - -1.6
781,138 - BBR_RS13415 0.11 +0.9
781,156 + BBR_RS13415 0.14 -1.4
781,164 - BBR_RS13415 0.15 -1.5
781,182 + BBR_RS13415 0.18 -0.4
781,182 + BBR_RS13415 0.18 +0.1
781,192 - BBR_RS13415 0.19 -0.0
781,244 - BBR_RS13415 0.28 +0.4
781,254 - BBR_RS13415 0.29 -2.5
781,269 - BBR_RS13415 0.32 -0.0
781,281 + BBR_RS13415 0.33 -2.0
781,297 + BBR_RS13415 0.36 -1.7
781,297 + BBR_RS13415 0.36 -3.7
781,305 - BBR_RS13415 0.37 -1.4
781,305 - BBR_RS13415 0.37 -0.2
781,305 - BBR_RS13415 0.37 -1.0
781,305 - BBR_RS13415 0.37 -0.8
781,305 - BBR_RS13415 0.37 -0.8
781,341 - BBR_RS13415 0.43 -1.2
781,367 + BBR_RS13415 0.47 -0.8
781,408 + BBR_RS13415 0.54 -2.5
781,408 + BBR_RS13415 0.54 +0.1
781,408 + BBR_RS13415 0.54 -1.0
781,413 - BBR_RS13415 0.54 -0.4
781,416 - BBR_RS13415 0.55 -0.6
781,416 - BBR_RS13415 0.55 -0.8
781,572 + BBR_RS13415 0.79 -3.5
781,597 - BBR_RS13415 0.83 +0.9
781,599 - BBR_RS13415 0.84 -2.1
781,599 - BBR_RS13415 0.84 +1.2
781,599 - BBR_RS13415 0.84 -0.4
781,628 - BBR_RS13415 0.88 -1.6
781,681 + -1.4
781,681 - -3.8
781,683 - -0.4
781,701 - +1.2
781,713 - -0.5
781,728 - -2.5
781,737 - +0.4
781,763 - +0.6
781,765 - -0.5
781,778 + -0.5
781,791 + -2.7
781,791 + -2.2
781,817 + -2.8
781,830 - -0.5
781,861 + -1.7
781,900 - BBR_RS20775 0.37 -2.7
781,941 + BBR_RS20775 0.74 -3.0
781,941 + BBR_RS20775 0.74 -1.9
782,070 + BBR_RS13420 0.32 -2.4
782,139 - BBR_RS13420 0.56 +0.3
782,155 + BBR_RS13420 0.61 -1.0
782,179 + BBR_RS13420 0.69 +1.3
782,210 - BBR_RS13420 0.80 -1.2
782,242 + -2.3
782,247 - -2.0
782,260 - -2.3
782,339 - +0.3
782,408 - -0.8
782,417 + -1.6
782,424 - +0.4
782,445 + -3.6
782,499 + BBR_RS13425 0.13 -1.9
782,499 + BBR_RS13425 0.13 -0.1
782,556 + BBR_RS13425 0.20 -1.1
782,676 - BBR_RS13425 0.35 -2.7
782,676 - BBR_RS13425 0.35 +1.5

Or see this region's nucleotide sequence