Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27420 and AO353_27425 are separated by 158 nucleotides AO353_27425 and AO353_27430 are separated by 59 nucleotides AO353_27430 and AO353_27435 overlap by 4 nucleotides AO353_27435 and AO353_27440 are separated by 88 nucleotides AO353_27440 and AO353_27445 are separated by 2 nucleotides AO353_27445 and AO353_27450 are separated by 3 nucleotides
AO353_27420: AO353_27420 - DNA-binding protein, at 5,989,327 to 5,989,608
_27420
AO353_27425: AO353_27425 - transcriptional regulator, at 5,989,767 to 5,990,084
_27425
AO353_27430: AO353_27430 - hypothetical protein, at 5,990,144 to 5,990,563
_27430
AO353_27435: AO353_27435 - hypothetical protein, at 5,990,560 to 5,990,781
_27435
AO353_27440: AO353_27440 - hypothetical protein, at 5,990,870 to 5,991,106
_27440
AO353_27445: AO353_27445 - hypothetical protein, at 5,991,109 to 5,991,366
_27445
AO353_27450: AO353_27450 - integrase, at 5,991,370 to 5,992,434
_27450
Position (kb) 5990
5991 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.760 kb on + strand at 5989.760 kb on + strand at 5989.761 kb on - strand at 5989.761 kb on - strand at 5989.855 kb on + strand, within AO353_27425 at 5989.855 kb on + strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.989 kb on + strand, within AO353_27425 at 5989.990 kb on - strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.082 kb on + strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.297 kb on - strand, within AO353_27430 at 5990.307 kb on + strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.504 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.663 kb on - strand, within AO353_27435 at 5990.748 kb on - strand, within AO353_27435 at 5990.807 kb on - strand at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.012 kb on + strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.099 kb on - strand at 5991.099 kb on - strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.125 kb on - strand at 5991.173 kb on + strand, within AO353_27445 at 5991.173 kb on + strand, within AO353_27445 at 5991.174 kb on - strand, within AO353_27445 at 5991.174 kb on - strand, within AO353_27445 at 5991.185 kb on - strand, within AO353_27445 at 5991.278 kb on - strand, within AO353_27445 at 5991.278 kb on - strand, within AO353_27445 at 5991.293 kb on + strand, within AO353_27445 at 5991.318 kb on + strand, within AO353_27445 at 5991.319 kb on - strand, within AO353_27445 at 5991.359 kb on + strand at 5991.359 kb on + strand at 5991.359 kb on + strand at 5991.360 kb on - strand at 5991.360 kb on - strand at 5991.364 kb on + strand at 5991.364 kb on + strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.463 kb on + strand at 5991.463 kb on + strand at 5991.463 kb on + strand at 5991.464 kb on - strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.608 kb on - strand, within AO353_27450 at 5991.737 kb on - strand, within AO353_27450
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 5,989,572 - AO353_27420 0.87 -0.3 5,989,572 - AO353_27420 0.87 +0.5 5,989,572 - AO353_27420 0.87 -0.1 5,989,572 - AO353_27420 0.87 +0.4 5,989,614 - -0.1 5,989,614 - -0.9 5,989,614 - -1.3 5,989,760 + -0.9 5,989,760 + +0.5 5,989,761 - -0.7 5,989,761 - +0.2 5,989,855 + AO353_27425 0.28 -1.1 5,989,855 + AO353_27425 0.28 -2.2 5,989,856 - AO353_27425 0.28 -1.9 5,989,856 - AO353_27425 0.28 +1.6 5,989,856 - AO353_27425 0.28 +2.4 5,989,856 - AO353_27425 0.28 -1.1 5,989,856 - AO353_27425 0.28 +0.5 5,989,887 + AO353_27425 0.38 +1.3 5,989,887 + AO353_27425 0.38 -1.2 5,989,888 - AO353_27425 0.38 -1.1 5,989,888 - AO353_27425 0.38 -0.7 5,989,888 - AO353_27425 0.38 -1.9 5,989,888 - AO353_27425 0.38 -0.5 5,989,888 - AO353_27425 0.38 +1.7 5,989,989 + AO353_27425 0.70 -0.4 5,989,990 - AO353_27425 0.70 +0.9 5,990,034 + AO353_27425 0.84 +1.5 5,990,034 + AO353_27425 0.84 +0.3 5,990,035 - AO353_27425 0.84 -0.3 5,990,035 - AO353_27425 0.84 -0.1 5,990,035 - AO353_27425 0.84 +0.6 5,990,082 + +0.3 5,990,083 - +1.9 5,990,083 - -0.7 5,990,083 - +0.3 5,990,296 + AO353_27430 0.36 -1.2 5,990,296 + AO353_27430 0.36 +1.5 5,990,296 + AO353_27430 0.36 +0.5 5,990,297 - AO353_27430 0.36 -1.4 5,990,307 + AO353_27430 0.39 +0.1 5,990,308 - AO353_27430 0.39 -1.1 5,990,308 - AO353_27430 0.39 +0.5 5,990,308 - AO353_27430 0.39 -0.1 5,990,503 + AO353_27430 0.85 +2.3 5,990,503 + AO353_27430 0.85 -0.7 5,990,504 - AO353_27430 0.86 -0.5 5,990,507 - AO353_27430 0.86 +1.3 5,990,507 - AO353_27430 0.86 +0.3 5,990,663 - AO353_27435 0.46 -1.4 5,990,748 - AO353_27435 0.85 -0.8 5,990,807 - -0.3 5,991,010 + AO353_27440 0.59 -0.1 5,991,010 + AO353_27440 0.59 +1.1 5,991,010 + AO353_27440 0.59 +1.4 5,991,010 + AO353_27440 0.59 -0.8 5,991,010 + AO353_27440 0.59 +0.9 5,991,010 + AO353_27440 0.59 -0.1 5,991,010 + AO353_27440 0.59 -0.4 5,991,011 - AO353_27440 0.59 +1.7 5,991,011 - AO353_27440 0.59 +1.9 5,991,011 - AO353_27440 0.59 +0.6 5,991,011 - AO353_27440 0.59 -1.1 5,991,011 - AO353_27440 0.59 -1.2 5,991,012 + AO353_27440 0.60 +0.2 5,991,013 - AO353_27440 0.60 -1.1 5,991,013 - AO353_27440 0.60 +0.9 5,991,013 - AO353_27440 0.60 +1.2 5,991,099 - -0.1 5,991,099 - -0.8 5,991,100 + +1.9 5,991,100 + +1.0 5,991,100 + -0.5 5,991,100 + -0.4 5,991,100 + -1.8 5,991,100 + +0.6 5,991,100 + -0.1 5,991,100 + -0.1 5,991,100 + -0.3 5,991,100 + +0.7 5,991,100 + +1.9 5,991,101 - +0.9 5,991,101 - +0.3 5,991,101 - +0.3 5,991,101 - +1.6 5,991,101 - -0.5 5,991,101 - +0.3 5,991,101 - -1.2 5,991,101 - -0.7 5,991,125 - -0.7 5,991,173 + AO353_27445 0.25 +1.1 5,991,173 + AO353_27445 0.25 -0.2 5,991,174 - AO353_27445 0.25 +0.9 5,991,174 - AO353_27445 0.25 +0.6 5,991,185 - AO353_27445 0.29 -0.5 5,991,278 - AO353_27445 0.66 -0.6 5,991,278 - AO353_27445 0.66 +0.3 5,991,293 + AO353_27445 0.71 +1.4 5,991,318 + AO353_27445 0.81 +0.1 5,991,319 - AO353_27445 0.81 +0.2 5,991,359 + -0.7 5,991,359 + -0.1 5,991,359 + +0.4 5,991,360 - +0.9 5,991,360 - +1.5 5,991,364 + -0.1 5,991,364 + +0.3 5,991,461 - -0.6 5,991,461 - -0.5 5,991,461 - +0.3 5,991,461 - +0.2 5,991,461 - +1.9 5,991,463 + -0.9 5,991,463 + -1.2 5,991,463 + +0.5 5,991,464 - -0.3 5,991,466 + -1.7 5,991,466 + +1.5 5,991,466 + -1.2 5,991,466 + -0.1 5,991,466 + -0.7 5,991,466 + -0.3 5,991,467 - +0.6 5,991,467 - +0.9 5,991,467 - -0.1 5,991,467 - +1.3 5,991,467 - +0.7 5,991,467 - +0.6 5,991,607 + AO353_27450 0.22 +0.3 5,991,607 + AO353_27450 0.22 -0.6 5,991,607 + AO353_27450 0.22 -1.4 5,991,607 + AO353_27450 0.22 -0.2 5,991,607 + AO353_27450 0.22 +0.9 5,991,608 - AO353_27450 0.22 -0.4 5,991,737 - AO353_27450 0.34 -0.7
Or see this region's nucleotide sequence