Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06160

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06155 and AO353_06160 overlap by 4 nucleotidesAO353_06160 and AO353_06165 overlap by 47 nucleotides AO353_06155: AO353_06155 - copper-transporting ATPase, at 1,372,418 to 1,374,814 _06155 AO353_06160: AO353_06160 - transcriptional regulator, at 1,374,811 to 1,375,224 _06160 AO353_06165: AO353_06165 - MFS transporter, at 1,375,178 to 1,376,419 _06165 Position (kb) 1374 1375 1376Strain fitness (log2 ratio) -2 -1 0 1at 1374.127 kb on + strand, within AO353_06155at 1374.127 kb on + strand, within AO353_06155at 1374.389 kb on - strand, within AO353_06155at 1374.627 kb on - strandat 1374.627 kb on - strandat 1374.627 kb on - strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.665 kb on + strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.666 kb on - strandat 1374.756 kb on + strandat 1374.757 kb on - strandat 1374.768 kb on + strandat 1374.769 kb on - strandat 1374.769 kb on - strandat 1374.846 kb on + strandat 1374.865 kb on + strand, within AO353_06160at 1374.865 kb on + strand, within AO353_06160at 1374.868 kb on + strand, within AO353_06160at 1374.868 kb on + strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.869 kb on - strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.925 kb on + strand, within AO353_06160at 1374.926 kb on - strand, within AO353_06160at 1374.926 kb on - strand, within AO353_06160at 1374.926 kb on - strand, within AO353_06160at 1375.241 kb on + strandat 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.308 kb on + strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.309 kb on - strand, within AO353_06165at 1375.482 kb on + strand, within AO353_06165at 1375.483 kb on - strand, within AO353_06165at 1375.483 kb on - strand, within AO353_06165at 1375.483 kb on - strand, within AO353_06165at 1375.684 kb on + strand, within AO353_06165at 1375.685 kb on - strandat 1375.862 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.878 kb on + strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1375.879 kb on - strand, within AO353_06165at 1376.065 kb on + strand, within AO353_06165at 1376.065 kb on + strand, within AO353_06165at 1376.099 kb on + strand, within AO353_06165at 1376.100 kb on - strand, within AO353_06165at 1376.100 kb on - strand, within AO353_06165at 1376.100 kb on - strand, within AO353_06165at 1376.126 kb on + strand, within AO353_06165at 1376.126 kb on + strand, within AO353_06165at 1376.126 kb on + strand, within AO353_06165at 1376.127 kb on - strand, within AO353_06165at 1376.141 kb on + strand, within AO353_06165at 1376.141 kb on + strand, within AO353_06165at 1376.142 kb on - strand, within AO353_06165at 1376.142 kb on - strand, within AO353_06165at 1376.142 kb on - strand, within AO353_06165at 1376.171 kb on + strand, within AO353_06165

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,374,127 + AO353_06155 0.71 -0.8
1,374,127 + AO353_06155 0.71 -0.7
1,374,389 - AO353_06155 0.82 +0.7
1,374,627 - -1.0
1,374,627 - -1.7
1,374,627 - -0.1
1,374,665 + -1.2
1,374,665 + -1.5
1,374,665 + -0.7
1,374,665 + -0.5
1,374,665 + -0.1
1,374,666 - -0.5
1,374,666 - -0.4
1,374,666 - -2.4
1,374,666 - -0.3
1,374,666 - +0.1
1,374,666 - -1.4
1,374,756 + +0.3
1,374,757 - -1.0
1,374,768 + -0.3
1,374,769 - +1.3
1,374,769 - -0.2
1,374,846 + +0.5
1,374,865 + AO353_06160 0.13 +0.2
1,374,865 + AO353_06160 0.13 -0.3
1,374,868 + AO353_06160 0.14 -0.9
1,374,868 + AO353_06160 0.14 -0.7
1,374,869 - AO353_06160 0.14 +0.1
1,374,869 - AO353_06160 0.14 -0.3
1,374,869 - AO353_06160 0.14 -0.4
1,374,869 - AO353_06160 0.14 -0.9
1,374,925 + AO353_06160 0.28 +0.1
1,374,925 + AO353_06160 0.28 -0.1
1,374,925 + AO353_06160 0.28 -1.3
1,374,925 + AO353_06160 0.28 -0.3
1,374,925 + AO353_06160 0.28 -0.3
1,374,925 + AO353_06160 0.28 -1.4
1,374,925 + AO353_06160 0.28 +0.9
1,374,925 + AO353_06160 0.28 -1.4
1,374,925 + AO353_06160 0.28 -2.1
1,374,926 - AO353_06160 0.28 +0.1
1,374,926 - AO353_06160 0.28 -0.8
1,374,926 - AO353_06160 0.28 -1.5
1,375,241 + -0.2
1,375,308 + AO353_06165 0.10 +1.5
1,375,308 + AO353_06165 0.10 +0.2
1,375,308 + AO353_06165 0.10 -0.1
1,375,308 + AO353_06165 0.10 -0.9
1,375,308 + AO353_06165 0.10 +1.7
1,375,308 + AO353_06165 0.10 -0.6
1,375,309 - AO353_06165 0.11 -0.4
1,375,309 - AO353_06165 0.11 +0.4
1,375,309 - AO353_06165 0.11 +0.2
1,375,309 - AO353_06165 0.11 -0.6
1,375,482 + AO353_06165 0.24 +1.2
1,375,483 - AO353_06165 0.25 -0.7
1,375,483 - AO353_06165 0.25 +0.7
1,375,483 - AO353_06165 0.25 -0.7
1,375,684 + AO353_06165 0.41 -1.3
1,375,685 - +1.7
1,375,862 + AO353_06165 0.55 +0.8
1,375,878 + AO353_06165 0.56 -0.1
1,375,878 + AO353_06165 0.56 +0.0
1,375,878 + AO353_06165 0.56 +0.3
1,375,878 + AO353_06165 0.56 +0.6
1,375,878 + AO353_06165 0.56 -0.7
1,375,878 + AO353_06165 0.56 -1.3
1,375,878 + AO353_06165 0.56 +0.9
1,375,878 + AO353_06165 0.56 +1.7
1,375,878 + AO353_06165 0.56 -0.5
1,375,879 - AO353_06165 0.56 -1.0
1,375,879 - AO353_06165 0.56 +0.7
1,375,879 - AO353_06165 0.56 -0.9
1,375,879 - AO353_06165 0.56 +1.7
1,375,879 - AO353_06165 0.56 +1.7
1,375,879 - AO353_06165 0.56 -1.7
1,375,879 - AO353_06165 0.56 +1.3
1,375,879 - AO353_06165 0.56 +0.2
1,375,879 - AO353_06165 0.56 +0.4
1,375,879 - AO353_06165 0.56 -1.0
1,375,879 - AO353_06165 0.56 -0.7
1,376,065 + AO353_06165 0.71 +0.6
1,376,065 + AO353_06165 0.71 +0.2
1,376,099 + AO353_06165 0.74 -1.0
1,376,100 - AO353_06165 0.74 -0.6
1,376,100 - AO353_06165 0.74 -1.4
1,376,100 - AO353_06165 0.74 -0.1
1,376,126 + AO353_06165 0.76 -1.5
1,376,126 + AO353_06165 0.76 +0.2
1,376,126 + AO353_06165 0.76 -1.2
1,376,127 - AO353_06165 0.76 +0.2
1,376,141 + AO353_06165 0.78 +0.9
1,376,141 + AO353_06165 0.78 -0.1
1,376,142 - AO353_06165 0.78 +0.2
1,376,142 - AO353_06165 0.78 -0.4
1,376,142 - AO353_06165 0.78 +0.1
1,376,171 + AO353_06165 0.80 -0.0

Or see this region's nucleotide sequence