Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02995 and AO353_03000 are separated by 12 nucleotides AO353_03000 and AO353_03005 are separated by 63 nucleotides AO353_03005 and AO353_03010 are separated by 128 nucleotides
AO353_02995: AO353_02995 - succinylglutamate desuccinylase, at 635,209 to 636,219
_02995
AO353_03000: AO353_03000 - topoisomerase II, at 636,232 to 636,519
_03000
AO353_03005: AO353_03005 - succinylarginine dihydrolase, at 636,583 to 637,929
_03005
AO353_03010: AO353_03010 - succinylglutamate-semialdehyde dehydrogenase, at 638,058 to 639,521
_03010
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.609 kb on + strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.610 kb on - strand, within AO353_02995 at 635.615 kb on + strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.616 kb on - strand, within AO353_02995 at 635.726 kb on + strand, within AO353_02995 at 635.777 kb on + strand, within AO353_02995 at 635.778 kb on - strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.961 kb on + strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 635.962 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.017 kb on - strand, within AO353_02995 at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.219 kb on + strand at 636.220 kb on - strand at 636.220 kb on - strand at 636.313 kb on + strand, within AO353_03000 at 636.313 kb on + strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.314 kb on - strand, within AO353_03000 at 636.322 kb on - strand, within AO353_03000 at 636.523 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.541 kb on + strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.542 kb on - strand at 636.603 kb on - strand at 636.619 kb on - strand at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.741 kb on - strand, within AO353_03005 at 636.808 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.911 kb on + strand, within AO353_03005 at 636.912 kb on - strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.004 kb on + strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.005 kb on - strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.139 kb on + strand, within AO353_03005 at 637.140 kb on - strand, within AO353_03005 at 637.298 kb on + strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.524 kb on - strand, within AO353_03005 at 637.573 kb on - strand, within AO353_03005 at 637.862 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.877 kb on + strand at 637.881 kb on + strand at 637.897 kb on + strand at 637.897 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.919 kb on + strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.920 kb on - strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.957 kb on + strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.958 kb on - strand at 637.959 kb on + strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 637.960 kb on - strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.007 kb on + strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.008 kb on - strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.016 kb on + strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.017 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.030 kb on - strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.037 kb on + strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.038 kb on - strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.059 kb on + strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.060 kb on - strand at 638.138 kb on - strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.149 kb on + strand at 638.150 kb on - strand at 638.150 kb on - strand at 638.152 kb on + strand at 638.152 kb on + strand at 638.153 kb on - strand at 638.153 kb on - strand at 638.317 kb on + strand, within AO353_03010 at 638.723 kb on + strand, within AO353_03010 at 638.724 kb on - strand, within AO353_03010 at 638.731 kb on + strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.732 kb on - strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.928 kb on + strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010 at 638.929 kb on - strand, within AO353_03010
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 635,609 + AO353_02995 0.40 +0.4 635,609 + AO353_02995 0.40 +0.6 635,609 + AO353_02995 0.40 +1.2 635,610 - AO353_02995 0.40 -0.1 635,610 - AO353_02995 0.40 +0.4 635,610 - AO353_02995 0.40 +0.1 635,610 - AO353_02995 0.40 -0.6 635,610 - AO353_02995 0.40 +0.4 635,615 + AO353_02995 0.40 +0.3 635,616 - AO353_02995 0.40 +0.2 635,616 - AO353_02995 0.40 +0.6 635,726 + AO353_02995 0.51 -0.5 635,777 + AO353_02995 0.56 -0.6 635,778 - AO353_02995 0.56 -0.1 635,961 + AO353_02995 0.74 -0.3 635,961 + AO353_02995 0.74 -0.0 635,961 + AO353_02995 0.74 +0.4 635,961 + AO353_02995 0.74 +0.1 635,961 + AO353_02995 0.74 -0.0 635,961 + AO353_02995 0.74 +0.8 635,962 - AO353_02995 0.74 +0.5 635,962 - AO353_02995 0.74 +0.3 635,962 - AO353_02995 0.74 -0.8 636,017 - AO353_02995 0.80 +0.7 636,017 - AO353_02995 0.80 -0.2 636,219 + +0.1 636,219 + +0.7 636,219 + +0.5 636,219 + +0.1 636,219 + +3.0 636,219 + +0.9 636,219 + +0.5 636,220 - +0.3 636,220 - +0.7 636,313 + AO353_03000 0.28 +0.2 636,313 + AO353_03000 0.28 -0.1 636,314 - AO353_03000 0.28 -0.3 636,314 - AO353_03000 0.28 +0.7 636,322 - AO353_03000 0.31 -0.7 636,523 + -0.6 636,541 + -0.0 636,541 + -0.6 636,541 + +0.1 636,542 - +1.7 636,542 - +0.0 636,542 - +0.1 636,542 - +1.1 636,542 - -0.2 636,542 - +1.4 636,603 - +0.7 636,619 - +0.4 636,741 - AO353_03005 0.12 -0.4 636,741 - AO353_03005 0.12 +0.7 636,741 - AO353_03005 0.12 -1.4 636,741 - AO353_03005 0.12 -0.0 636,741 - AO353_03005 0.12 -0.6 636,741 - AO353_03005 0.12 -0.6 636,808 + AO353_03005 0.17 -1.0 636,911 + AO353_03005 0.24 -1.9 636,911 + AO353_03005 0.24 -0.6 636,911 + AO353_03005 0.24 +0.1 636,912 - AO353_03005 0.24 +0.8 637,004 + AO353_03005 0.31 -0.4 637,004 + AO353_03005 0.31 +1.4 637,005 - AO353_03005 0.31 -0.8 637,005 - AO353_03005 0.31 -0.8 637,005 - AO353_03005 0.31 -0.2 637,005 - AO353_03005 0.31 -0.5 637,139 + AO353_03005 0.41 -0.1 637,139 + AO353_03005 0.41 -2.1 637,140 - AO353_03005 0.41 -1.6 637,298 + AO353_03005 0.53 +1.7 637,524 - AO353_03005 0.70 -1.8 637,524 - AO353_03005 0.70 -1.4 637,573 - AO353_03005 0.73 -2.1 637,862 + +0.7 637,877 + -0.6 637,877 + +0.4 637,877 + -0.5 637,877 + -0.7 637,881 + -0.6 637,897 + -0.2 637,897 + +0.2 637,919 + +0.6 637,919 + -1.0 637,919 + -0.4 637,919 + -0.5 637,920 - -1.9 637,920 - +0.1 637,920 - -0.3 637,957 + -0.7 637,957 + -0.6 637,957 + +1.6 637,958 - -0.5 637,958 - -0.8 637,958 - +0.5 637,959 + -3.3 637,960 - +1.0 637,960 - -0.7 637,960 - +0.6 637,960 - +0.4 637,960 - -0.4 638,007 + -1.1 638,007 + -0.1 638,007 + -2.1 638,007 + +0.8 638,007 + -1.4 638,007 + -1.8 638,008 - -0.3 638,008 - -0.3 638,008 - +0.4 638,016 + -0.5 638,016 + -0.6 638,016 + -0.3 638,016 + +1.8 638,017 - -0.1 638,017 - -0.2 638,017 - +0.5 638,030 - +0.4 638,030 - -0.8 638,030 - -0.6 638,037 + -1.6 638,037 + -1.9 638,037 + -1.2 638,037 + -2.1 638,037 + -0.6 638,037 + -0.7 638,037 + -1.1 638,037 + +1.0 638,038 - -0.6 638,038 - -0.6 638,038 - +0.3 638,038 - -2.6 638,038 - -1.2 638,038 - -0.2 638,038 - +0.2 638,038 - +1.8 638,038 - +0.4 638,038 - +0.4 638,038 - -0.2 638,038 - -0.6 638,038 - +1.1 638,038 - -0.0 638,038 - -0.3 638,059 + +1.2 638,059 + -0.7 638,059 + -0.6 638,059 + +0.2 638,059 + -0.9 638,060 - +0.6 638,060 - -0.2 638,060 - -0.8 638,060 - -1.7 638,060 - +0.1 638,138 - +0.4 638,149 + +0.4 638,149 + +0.3 638,149 + -0.4 638,150 - -0.6 638,150 - -3.4 638,152 + -0.7 638,152 + -0.0 638,153 - -1.1 638,153 - -1.8 638,317 + AO353_03010 0.18 -2.6 638,723 + AO353_03010 0.45 +0.0 638,724 - AO353_03010 0.45 -1.8 638,731 + AO353_03010 0.46 -0.8 638,732 - AO353_03010 0.46 +0.9 638,732 - AO353_03010 0.46 +0.0 638,732 - AO353_03010 0.46 -0.1 638,928 + AO353_03010 0.59 +0.1 638,928 + AO353_03010 0.59 -0.2 638,929 - AO353_03010 0.59 -0.6 638,929 - AO353_03010 0.59 -0.8 638,929 - AO353_03010 0.59 -0.3
Or see this region's nucleotide sequence