Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01155

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01145 and AO353_01150 are separated by 108 nucleotidesAO353_01150 and AO353_01155 are separated by 107 nucleotidesAO353_01155 and AO353_01160 are separated by 25 nucleotides AO353_01145: AO353_01145 - magnesium transporter, at 252,580 to 253,551 _01145 AO353_01150: AO353_01150 - amidotransferase, at 253,660 to 254,388 _01150 AO353_01155: AO353_01155 - 3-hydroxyacyl-CoA dehydrogenase, at 254,496 to 256,640 _01155 AO353_01160: AO353_01160 - acetyl-CoA acetyltransferase, at 256,666 to 257,871 _01160 Position (kb) 254 255 256 257Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.547 kb on + strandat 253.548 kb on - strandat 253.548 kb on - strandat 253.550 kb on - strandat 253.550 kb on - strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.611 kb on + strandat 253.617 kb on + strandat 253.617 kb on + strandat 253.617 kb on + strandat 253.618 kb on - strandat 253.618 kb on - strandat 253.618 kb on - strandat 253.661 kb on + strandat 253.763 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.814 kb on + strand, within AO353_01150at 253.871 kb on + strand, within AO353_01150at 253.872 kb on - strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.012 kb on + strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.013 kb on - strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.141 kb on + strand, within AO353_01150at 254.142 kb on - strand, within AO353_01150at 254.142 kb on - strand, within AO353_01150at 254.142 kb on - strandat 254.142 kb on - strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.258 kb on + strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.259 kb on - strand, within AO353_01150at 254.327 kb on + strandat 254.327 kb on + strandat 254.327 kb on + strandat 254.328 kb on - strandat 254.407 kb on + strandat 254.575 kb on + strandat 254.575 kb on + strandat 254.575 kb on + strandat 254.608 kb on + strandat 254.712 kb on + strand, within AO353_01155at 254.712 kb on + strand, within AO353_01155at 254.712 kb on + strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.713 kb on - strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.760 kb on + strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.761 kb on - strand, within AO353_01155at 254.845 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.851 kb on + strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.852 kb on - strand, within AO353_01155at 254.981 kb on + strand, within AO353_01155at 254.982 kb on - strand, within AO353_01155at 255.030 kb on + strand, within AO353_01155at 255.227 kb on + strand, within AO353_01155at 255.227 kb on + strand, within AO353_01155at 255.350 kb on + strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.351 kb on - strand, within AO353_01155at 255.525 kb on + strand, within AO353_01155at 255.525 kb on + strand, within AO353_01155at 255.526 kb on - strand, within AO353_01155at 255.643 kb on + strand, within AO353_01155at 255.643 kb on + strand, within AO353_01155at 255.643 kb on + strand, within AO353_01155at 255.643 kb on + strand, within AO353_01155at 255.643 kb on + strand, within AO353_01155at 255.644 kb on - strand, within AO353_01155at 255.644 kb on - strand, within AO353_01155at 255.644 kb on - strand, within AO353_01155at 255.644 kb on - strand, within AO353_01155at 255.998 kb on + strand, within AO353_01155at 256.390 kb on + strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.391 kb on - strand, within AO353_01155at 256.559 kb on + strandat 256.559 kb on + strandat 256.559 kb on + strandat 256.560 kb on - strandat 256.560 kb on - strandat 256.560 kb on - strandat 256.640 kb on + strandat 256.640 kb on + strandat 256.640 kb on + strandat 256.641 kb on - strandat 256.816 kb on - strand, within AO353_01160at 256.816 kb on - strand, within AO353_01160at 257.153 kb on + strand, within AO353_01160at 257.153 kb on + strand, within AO353_01160at 257.153 kb on + strand, within AO353_01160at 257.154 kb on - strand, within AO353_01160at 257.154 kb on - strand, within AO353_01160at 257.154 kb on - strand, within AO353_01160at 257.366 kb on + strand, within AO353_01160at 257.366 kb on + strand, within AO353_01160at 257.366 kb on + strand, within AO353_01160at 257.367 kb on - strand, within AO353_01160at 257.367 kb on - strand, within AO353_01160at 257.367 kb on - strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.370 kb on + strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160at 257.371 kb on - strand, within AO353_01160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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253,547 + -0.4
253,547 + +0.4
253,547 + -0.7
253,547 + -0.3
253,547 + +0.7
253,548 - +2.3
253,548 - +0.3
253,550 - +1.3
253,550 - -0.1
253,611 + -0.0
253,611 + -1.3
253,611 + +0.1
253,611 + +0.7
253,611 + +0.4
253,617 + +1.7
253,617 + -0.6
253,617 + -2.3
253,618 - +0.1
253,618 - +0.3
253,618 - -2.8
253,661 + -0.5
253,763 + AO353_01150 0.14 +0.8
253,814 + AO353_01150 0.21 +1.3
253,814 + AO353_01150 0.21 -0.9
253,814 + AO353_01150 0.21 -0.7
253,871 + AO353_01150 0.29 +0.2
253,872 - AO353_01150 0.29 -0.6
254,012 + AO353_01150 0.48 +1.3
254,012 + AO353_01150 0.48 -0.1
254,012 + AO353_01150 0.48 -1.0
254,012 + AO353_01150 0.48 -1.1
254,012 + AO353_01150 0.48 +1.3
254,012 + AO353_01150 0.48 -0.7
254,012 + AO353_01150 0.48 +1.7
254,013 - AO353_01150 0.48 -0.5
254,013 - AO353_01150 0.48 -2.3
254,013 - AO353_01150 0.48 -0.2
254,141 + AO353_01150 0.66 -0.6
254,141 + AO353_01150 0.66 -0.7
254,141 + AO353_01150 0.66 -0.7
254,141 + AO353_01150 0.66 +0.8
254,142 - AO353_01150 0.66 -0.6
254,142 - AO353_01150 0.66 -0.7
254,142 - +1.8
254,142 - AO353_01150 0.66 +0.3
254,258 + AO353_01150 0.82 +0.7
254,258 + AO353_01150 0.82 -0.6
254,258 + AO353_01150 0.82 +0.5
254,258 + AO353_01150 0.82 +0.8
254,258 + AO353_01150 0.82 +0.7
254,259 - AO353_01150 0.82 -0.3
254,259 - AO353_01150 0.82 -0.2
254,259 - AO353_01150 0.82 +0.1
254,259 - AO353_01150 0.82 -0.1
254,259 - AO353_01150 0.82 +0.9
254,327 + +0.8
254,327 + -0.2
254,327 + +0.4
254,328 - -0.7
254,407 + +0.6
254,575 + +0.7
254,575 + -0.3
254,575 + -0.3
254,608 + +1.3
254,712 + AO353_01155 0.10 -0.7
254,712 + AO353_01155 0.10 -0.6
254,712 + AO353_01155 0.10 -0.3
254,713 - AO353_01155 0.10 +0.3
254,713 - AO353_01155 0.10 -0.4
254,713 - AO353_01155 0.10 -0.2
254,713 - AO353_01155 0.10 -0.5
254,760 + AO353_01155 0.12 -1.6
254,760 + AO353_01155 0.12 -0.6
254,760 + AO353_01155 0.12 -0.3
254,760 + AO353_01155 0.12 +0.2
254,760 + AO353_01155 0.12 -0.6
254,760 + AO353_01155 0.12 -1.3
254,760 + AO353_01155 0.12 -0.9
254,760 + AO353_01155 0.12 -0.6
254,761 - AO353_01155 0.12 +0.9
254,761 - AO353_01155 0.12 +0.4
254,761 - AO353_01155 0.12 +0.1
254,761 - AO353_01155 0.12 -0.2
254,761 - AO353_01155 0.12 +1.1
254,761 - AO353_01155 0.12 -1.2
254,761 - AO353_01155 0.12 +0.5
254,845 + AO353_01155 0.16 -0.9
254,851 + AO353_01155 0.17 -0.5
254,851 + AO353_01155 0.17 -1.3
254,851 + AO353_01155 0.17 -0.8
254,851 + AO353_01155 0.17 -0.1
254,851 + AO353_01155 0.17 -0.3
254,851 + AO353_01155 0.17 -0.7
254,851 + AO353_01155 0.17 -0.5
254,851 + AO353_01155 0.17 +0.2
254,851 + AO353_01155 0.17 +0.3
254,852 - AO353_01155 0.17 -1.3
254,852 - AO353_01155 0.17 -1.6
254,852 - AO353_01155 0.17 +0.3
254,852 - AO353_01155 0.17 -1.3
254,981 + AO353_01155 0.23 -0.7
254,982 - AO353_01155 0.23 +0.3
255,030 + AO353_01155 0.25 +0.6
255,227 + AO353_01155 0.34 +0.9
255,227 + AO353_01155 0.34 +0.4
255,350 + AO353_01155 0.40 -0.8
255,351 - AO353_01155 0.40 +0.1
255,351 - AO353_01155 0.40 +0.9
255,351 - AO353_01155 0.40 -0.9
255,351 - AO353_01155 0.40 -1.3
255,351 - AO353_01155 0.40 -0.6
255,351 - AO353_01155 0.40 +0.8
255,351 - AO353_01155 0.40 -0.6
255,525 + AO353_01155 0.48 -0.3
255,525 + AO353_01155 0.48 +0.7
255,526 - AO353_01155 0.48 -1.1
255,643 + AO353_01155 0.53 -0.3
255,643 + AO353_01155 0.53 -1.0
255,643 + AO353_01155 0.53 +0.4
255,643 + AO353_01155 0.53 +0.8
255,643 + AO353_01155 0.53 +0.4
255,644 - AO353_01155 0.54 -1.2
255,644 - AO353_01155 0.54 +0.1
255,644 - AO353_01155 0.54 +0.0
255,644 - AO353_01155 0.54 -0.3
255,998 + AO353_01155 0.70 -0.6
256,390 + AO353_01155 0.88 -0.7
256,391 - AO353_01155 0.88 -1.2
256,391 - AO353_01155 0.88 -0.9
256,391 - AO353_01155 0.88 -1.7
256,391 - AO353_01155 0.88 +0.0
256,391 - AO353_01155 0.88 -0.6
256,559 + -0.7
256,559 + -0.9
256,559 + +0.7
256,560 - +0.8
256,560 - +0.1
256,560 - +0.8
256,640 + -0.1
256,640 + -0.3
256,640 + -0.7
256,641 - +0.0
256,816 - AO353_01160 0.12 -1.9
256,816 - AO353_01160 0.12 -0.2
257,153 + AO353_01160 0.40 +1.3
257,153 + AO353_01160 0.40 +0.4
257,153 + AO353_01160 0.40 -1.6
257,154 - AO353_01160 0.40 -0.6
257,154 - AO353_01160 0.40 -0.2
257,154 - AO353_01160 0.40 -0.3
257,366 + AO353_01160 0.58 -0.2
257,366 + AO353_01160 0.58 +0.3
257,366 + AO353_01160 0.58 -1.3
257,367 - AO353_01160 0.58 -0.0
257,367 - AO353_01160 0.58 -0.8
257,367 - AO353_01160 0.58 +0.7
257,370 + AO353_01160 0.58 -0.4
257,370 + AO353_01160 0.58 +0.4
257,370 + AO353_01160 0.58 -0.0
257,370 + AO353_01160 0.58 -0.9
257,370 + AO353_01160 0.58 +0.2
257,370 + AO353_01160 0.58 -0.8
257,371 - AO353_01160 0.58 +0.1
257,371 - AO353_01160 0.58 +0.1
257,371 - AO353_01160 0.58 +0.3
257,371 - AO353_01160 0.58 -1.7
257,371 - AO353_01160 0.58 -0.7

Or see this region's nucleotide sequence