Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fabG and Shew_1674 are separated by 113 nucleotides Shew_1674 and Shew_1675 are separated by 9 nucleotides Shew_1675 and Shew_1676 are separated by 213 nucleotides
Shew_1673: fabG - 3-ketoacyl-(acyl-carrier-protein) reductase (RefSeq), at 1,922,950 to 1,923,708
fabG
Shew_1674: Shew_1674 - hypothetical protein (RefSeq), at 1,923,822 to 1,924,079
_1674
Shew_1675: Shew_1675 - peptidase S9 prolyl oligopeptidase (RefSeq), at 1,924,089 to 1,926,140
_1675
Shew_1676: Shew_1676 - ABC transporter-related protein (RefSeq), at 1,926,354 to 1,927,949
_1676
Position (kb) 1924
1925
1926
1927 Strain fitness (log2 ratio) -1
0
1
2 at 1923.385 kb on - strand, within fabG at 1923.400 kb on - strand, within fabG at 1924.267 kb on - strand at 1924.585 kb on - strand, within Shew_1675 at 1925.329 kb on + strand, within Shew_1675 at 1925.337 kb on - strand, within Shew_1675 at 1925.469 kb on + strand, within Shew_1675 at 1925.821 kb on - strand, within Shew_1675 at 1926.011 kb on + strand at 1926.144 kb on - strand at 1927.041 kb on - strand, within Shew_1676
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 1,923,385 - fabG Shew_1673 0.57 -0.9 1,923,400 - fabG Shew_1673 0.59 +1.2 1,924,267 - +0.9 1,924,585 - Shew_1675 0.24 +0.7 1,925,329 + Shew_1675 0.60 +1.1 1,925,337 - Shew_1675 0.61 +0.8 1,925,469 + Shew_1675 0.67 +0.5 1,925,821 - Shew_1675 0.84 +0.7 1,926,011 + +0.7 1,926,144 - +1.0 1,927,041 - Shew_1676 0.43 +2.0
Or see this region's nucleotide sequence