Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0778 and Shew_0779 are separated by 409 nucleotides Shew_0779 and Shew_0780 overlap by 4 nucleotides
Shew_0778: Shew_0778 - hypothetical protein (RefSeq), at 889,300 to 889,731
_0778
Shew_0779: Shew_0779 - aspartate kinase III (RefSeq), at 890,141 to 891,499
_0779
Shew_0780: Shew_0780 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 891,496 to 892,602
_0780
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1 at 889.245 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.245 kb on - strand at 889.355 kb on - strand, within Shew_0778 at 889.480 kb on + strand, within Shew_0778 at 889.534 kb on + strand, within Shew_0778 at 889.539 kb on + strand, within Shew_0778 at 889.655 kb on + strand, within Shew_0778 at 889.822 kb on + strand at 889.830 kb on - strand at 890.329 kb on + strand, within Shew_0779 at 890.370 kb on + strand, within Shew_0779 at 891.072 kb on - strand, within Shew_0779 at 891.171 kb on + strand, within Shew_0779 at 891.199 kb on + strand, within Shew_0779 at 891.283 kb on + strand, within Shew_0779 at 891.517 kb on - strand at 891.642 kb on - strand, within Shew_0780 at 891.965 kb on + strand, within Shew_0780 at 892.016 kb on + strand, within Shew_0780 at 892.038 kb on + strand, within Shew_0780 at 892.046 kb on - strand, within Shew_0780 at 892.084 kb on - strand, within Shew_0780 at 892.089 kb on - strand, within Shew_0780 at 892.167 kb on - strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.233 kb on + strand, within Shew_0780 at 892.381 kb on + strand, within Shew_0780
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 889,245 - +0.3 889,245 - -0.4 889,245 - +0.9 889,245 - +0.7 889,355 - Shew_0778 0.13 -0.7 889,480 + Shew_0778 0.42 +0.2 889,534 + Shew_0778 0.54 -0.0 889,539 + Shew_0778 0.55 +0.3 889,655 + Shew_0778 0.82 +0.2 889,822 + +0.2 889,830 - +0.2 890,329 + Shew_0779 0.14 +0.5 890,370 + Shew_0779 0.17 -0.3 891,072 - Shew_0779 0.69 -0.3 891,171 + Shew_0779 0.76 +0.7 891,199 + Shew_0779 0.78 +0.2 891,283 + Shew_0779 0.84 +0.0 891,517 - -0.3 891,642 - Shew_0780 0.13 -0.1 891,965 + Shew_0780 0.42 -0.3 892,016 + Shew_0780 0.47 +0.2 892,038 + Shew_0780 0.49 -0.1 892,046 - Shew_0780 0.50 +1.0 892,084 - Shew_0780 0.53 +0.1 892,089 - Shew_0780 0.54 +0.5 892,167 - Shew_0780 0.61 -1.1 892,233 + Shew_0780 0.67 +0.1 892,233 + Shew_0780 0.67 +0.2 892,381 + Shew_0780 0.80 +0.1
Or see this region's nucleotide sequence