Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0755 and Shew_0756 are separated by 211 nucleotides Shew_0756 and Shew_0757 are separated by 246 nucleotides Shew_0757 and Shew_0758 are separated by 188 nucleotides
Shew_0755: Shew_0755 - fructose-1,6-bisphosphate aldolase (RefSeq), at 856,859 to 857,923
_0755
Shew_0756: Shew_0756 - hypothetical protein (RefSeq), at 858,135 to 858,875
_0756
Shew_0757: Shew_0757 - putative transcriptional regulator, CadC (RefSeq), at 859,122 to 859,577
_0757
Shew_0758: Shew_0758 - hypothetical protein (RefSeq), at 859,766 to 860,287
_0758
Position (kb) 858
859 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 857.257 kb on + strand, within Shew_0755 at 857.265 kb on - strand, within Shew_0755 at 857.808 kb on - strand, within Shew_0755 at 857.878 kb on + strand at 857.891 kb on - strand at 858.583 kb on - strand, within Shew_0756 at 858.629 kb on + strand, within Shew_0756 at 859.227 kb on + strand, within Shew_0757 at 859.396 kb on - strand, within Shew_0757 at 859.474 kb on - strand, within Shew_0757 at 859.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 857,257 + Shew_0755 0.37 +4.2 857,265 - Shew_0755 0.38 +3.3 857,808 - Shew_0755 0.89 +3.5 857,878 + +3.0 857,891 - +3.7 858,583 - Shew_0756 0.60 -0.9 858,629 + Shew_0756 0.67 +1.1 859,227 + Shew_0757 0.23 -0.1 859,396 - Shew_0757 0.60 +0.5 859,474 - Shew_0757 0.77 +0.6 859,686 - +0.7
Or see this region's nucleotide sequence