Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0383 and Shew_0384 are separated by 174 nucleotides Shew_0384 and Shew_0385 are separated by 236 nucleotides
Shew_0383: Shew_0383 - malate dehydrogenase (RefSeq), at 432,685 to 433,932
_0383
Shew_0384: Shew_0384 - regulatory protein CsrD (RefSeq), at 434,107 to 436,017
_0384
Shew_0385: Shew_0385 - biogenesis protein MshI (RefSeq), at 436,254 to 437,132
_0385
Position (kb) 434
435
436
437 Strain fitness (log2 ratio) -2
-1
0
1 at 433.246 kb on + strand, within Shew_0383 at 433.254 kb on - strand, within Shew_0383 at 433.498 kb on + strand, within Shew_0383 at 433.817 kb on + strand at 433.875 kb on - strand at 433.901 kb on + strand at 433.909 kb on - strand at 434.583 kb on + strand, within Shew_0384 at 434.662 kb on + strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.670 kb on - strand, within Shew_0384 at 434.908 kb on - strand, within Shew_0384 at 435.242 kb on + strand, within Shew_0384 at 435.398 kb on + strand, within Shew_0384 at 435.398 kb on + strand, within Shew_0384 at 435.444 kb on + strand, within Shew_0384 at 435.452 kb on - strand, within Shew_0384 at 435.565 kb on - strand, within Shew_0384 at 435.792 kb on - strand, within Shew_0384 at 435.971 kb on + strand at 435.979 kb on - strand at 436.052 kb on + strand at 436.664 kb on + strand, within Shew_0385 at 436.664 kb on + strand, within Shew_0385 at 436.886 kb on - strand, within Shew_0385
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 433,246 + Shew_0383 0.45 +0.9 433,254 - Shew_0383 0.46 +0.9 433,498 + Shew_0383 0.65 +1.1 433,817 + +1.3 433,875 - +1.6 433,901 + +0.2 433,909 - -0.2 434,583 + Shew_0384 0.25 -0.7 434,662 + Shew_0384 0.29 -1.0 434,670 - Shew_0384 0.29 -1.3 434,670 - Shew_0384 0.29 -0.9 434,908 - Shew_0384 0.42 -1.5 435,242 + Shew_0384 0.59 -1.1 435,398 + Shew_0384 0.68 -0.5 435,398 + Shew_0384 0.68 -1.6 435,444 + Shew_0384 0.70 -0.4 435,452 - Shew_0384 0.70 -1.0 435,565 - Shew_0384 0.76 -1.1 435,792 - Shew_0384 0.88 -2.0 435,971 + -0.8 435,979 - -0.7 436,052 + -2.2 436,664 + Shew_0385 0.47 -0.0 436,664 + Shew_0385 0.47 -0.5 436,886 - Shew_0385 0.72 -0.2
Or see this region's nucleotide sequence