Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0367 and Shew_0368 overlap by 4 nucleotides Shew_0368 and Shew_0369 overlap by 4 nucleotides Shew_0369 and Shew_0370 are separated by 10 nucleotides
Shew_0367: Shew_0367 - cytochrome-c oxidase (RefSeq), at 415,238 to 417,226
_0367
Shew_0368: Shew_0368 - cytochrome c oxidase, subunit III (RefSeq), at 417,223 to 417,849
_0368
Shew_0369: Shew_0369 - cytochrome C oxidase subunit IV (RefSeq), at 417,846 to 418,172
_0369
Shew_0370: Shew_0370 - protoheme IX farnesyltransferase (RefSeq), at 418,183 to 419,109
_0370
Position (kb) 417
418
419 Strain fitness (log2 ratio) -1
0
1 at 416.867 kb on - strand, within Shew_0367 at 416.911 kb on + strand, within Shew_0367 at 416.919 kb on - strand, within Shew_0367 at 416.964 kb on - strand, within Shew_0367 at 417.047 kb on + strand at 417.083 kb on - strand at 417.251 kb on + strand at 417.259 kb on - strand at 417.303 kb on - strand, within Shew_0368 at 417.470 kb on - strand, within Shew_0368 at 417.550 kb on + strand, within Shew_0368 at 417.558 kb on - strand, within Shew_0368 at 417.572 kb on + strand, within Shew_0368 at 417.580 kb on - strand, within Shew_0368 at 417.922 kb on + strand, within Shew_0369 at 417.944 kb on + strand, within Shew_0369 at 418.128 kb on - strand, within Shew_0369 at 418.505 kb on + strand, within Shew_0370 at 418.670 kb on - strand, within Shew_0370 at 419.036 kb on - strand at 419.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 416,867 - Shew_0367 0.82 -0.0 416,911 + Shew_0367 0.84 -0.5 416,919 - Shew_0367 0.85 -0.5 416,964 - Shew_0367 0.87 +0.7 417,047 + -0.6 417,083 - -0.1 417,251 + +0.4 417,259 - -0.1 417,303 - Shew_0368 0.13 -0.4 417,470 - Shew_0368 0.39 -0.8 417,550 + Shew_0368 0.52 -0.7 417,558 - Shew_0368 0.53 -0.4 417,572 + Shew_0368 0.56 -0.2 417,580 - Shew_0368 0.57 +0.0 417,922 + Shew_0369 0.23 -0.8 417,944 + Shew_0369 0.30 -1.0 418,128 - Shew_0369 0.86 -1.1 418,505 + Shew_0370 0.35 -0.3 418,670 - Shew_0370 0.53 -0.0 419,036 - -0.3 419,164 + +0.1
Or see this region's nucleotide sequence