Experiment: nitrite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0310 and Shew_0311 are separated by 31 nucleotides Shew_0311 and Shew_0312 overlap by 8 nucleotides
Shew_0310: Shew_0310 - TolC family type I secretion outer membrane protein (RefSeq), at 335,861 to 337,273
_0310
Shew_0311: Shew_0311 - HlyD family type I secretion membrane fusion protein (RefSeq), at 337,305 to 338,687
_0311
Shew_0312: Shew_0312 - ABC transporter-related protein (RefSeq), at 338,680 to 340,860
_0312
Position (kb) 337
338
339 Strain fitness (log2 ratio) -1
0
1 at 336.414 kb on + strand, within Shew_0310 at 336.651 kb on - strand, within Shew_0310 at 336.711 kb on - strand, within Shew_0310 at 336.804 kb on + strand, within Shew_0310 at 337.000 kb on - strand, within Shew_0310 at 337.000 kb on - strand, within Shew_0310 at 337.017 kb on + strand, within Shew_0310 at 337.182 kb on - strand at 337.462 kb on + strand, within Shew_0311 at 337.470 kb on - strand, within Shew_0311 at 337.524 kb on - strand, within Shew_0311 at 337.891 kb on + strand, within Shew_0311 at 337.901 kb on + strand, within Shew_0311 at 338.093 kb on - strand, within Shew_0311 at 338.192 kb on + strand, within Shew_0311 at 338.251 kb on + strand, within Shew_0311 at 338.251 kb on + strand, within Shew_0311 at 338.331 kb on + strand, within Shew_0311 at 338.497 kb on + strand, within Shew_0311 at 338.595 kb on - strand at 338.679 kb on - strand at 338.695 kb on - strand at 338.707 kb on - strand at 338.724 kb on + strand at 338.945 kb on + strand, within Shew_0312 at 339.066 kb on - strand, within Shew_0312 at 339.201 kb on - strand, within Shew_0312 at 339.270 kb on + strand, within Shew_0312 at 339.278 kb on - strand, within Shew_0312 at 339.358 kb on + strand, within Shew_0312 at 339.488 kb on - strand, within Shew_0312
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 200 mM remove 336,414 + Shew_0310 0.39 +0.2 336,651 - Shew_0310 0.56 -0.7 336,711 - Shew_0310 0.60 +0.0 336,804 + Shew_0310 0.67 +0.1 337,000 - Shew_0310 0.81 -0.0 337,000 - Shew_0310 0.81 +0.2 337,017 + Shew_0310 0.82 -0.1 337,182 - +0.4 337,462 + Shew_0311 0.11 -0.3 337,470 - Shew_0311 0.12 -0.4 337,524 - Shew_0311 0.16 +0.1 337,891 + Shew_0311 0.42 +0.9 337,901 + Shew_0311 0.43 +0.1 338,093 - Shew_0311 0.57 +0.1 338,192 + Shew_0311 0.64 +0.7 338,251 + Shew_0311 0.68 +0.6 338,251 + Shew_0311 0.68 +0.1 338,331 + Shew_0311 0.74 +0.8 338,497 + Shew_0311 0.86 -0.1 338,595 - -0.6 338,679 - +0.7 338,695 - -0.1 338,707 - +0.2 338,724 + -0.4 338,945 + Shew_0312 0.12 +0.9 339,066 - Shew_0312 0.18 +0.7 339,201 - Shew_0312 0.24 -0.2 339,270 + Shew_0312 0.27 -1.0 339,278 - Shew_0312 0.27 -0.3 339,358 + Shew_0312 0.31 +0.3 339,488 - Shew_0312 0.37 -0.0
Or see this region's nucleotide sequence