Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06535

Experiment: R2A with arsenate 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with arsenate 15.625 mM
1,403,919	+				+0.1
1,403,919	+				+0.8
1,403,919	+				+0.6
1,403,919	+				+1.1
1,403,919	+				+0.0
1,403,919	+				+1.0
1,403,919	+				+0.7
1,403,919	+				+0.2
1,403,919	+				+0.8
1,403,919	+				+1.0
1,403,920	-				+0.6
1,403,920	-				+1.1
1,403,920	-				-0.8
1,403,920	-				+2.3
1,403,920	-				+0.9
1,403,920	-				+0.7
1,403,920	-				+0.7
1,404,051	+		LRK54_RS06530	0.17	+0.9
1,404,051	+		LRK54_RS06530	0.17	+0.6
1,404,051	+		LRK54_RS06530	0.17	+1.0
1,404,051	+		LRK54_RS06530	0.17	+0.8
1,404,051	+		LRK54_RS06530	0.17	+1.6
1,404,051	+		LRK54_RS06530	0.17	+0.3
1,404,051	+		LRK54_RS06530	0.17	+0.8
1,404,051	+		LRK54_RS06530	0.17	-0.7
1,404,051	+		LRK54_RS06530	0.17	+0.4
1,404,051	+		LRK54_RS06530	0.17	+1.1
1,404,051	+		LRK54_RS06530	0.17	+1.4
1,404,051	+		LRK54_RS06530	0.17	+0.9
1,404,051	+		LRK54_RS06530	0.17	-0.3
1,404,051	+		LRK54_RS06530	0.17	+1.5
1,404,051	+		LRK54_RS06530	0.17	+1.1
1,404,051	+		LRK54_RS06530	0.17	+1.1
1,404,051	+		LRK54_RS06530	0.17	+1.0
1,404,051	+		LRK54_RS06530	0.17	+1.3
1,404,051	+		LRK54_RS06530	0.17	+1.9
1,404,051	+		LRK54_RS06530	0.17	+0.5
1,404,052	-		LRK54_RS06530	0.17	+1.0
1,404,052	-		LRK54_RS06530	0.17	+0.3
1,404,052	-		LRK54_RS06530	0.17	+0.7
1,404,052	-		LRK54_RS06530	0.17	+0.3
1,404,052	-		LRK54_RS06530	0.17	+0.9
1,404,052	-		LRK54_RS06530	0.17	+0.5
1,404,052	-		LRK54_RS06530	0.17	+1.3
1,404,052	-		LRK54_RS06530	0.17	+0.5
1,404,052	-		LRK54_RS06530	0.17	+0.1
1,404,052	-		LRK54_RS06530	0.17	+0.4
1,404,052	-		LRK54_RS06530	0.17	+1.0
1,404,052	-		LRK54_RS06530	0.17	+1.1
1,404,052	-		LRK54_RS06530	0.17	+0.4
1,404,052	-		LRK54_RS06530	0.17	+0.2
1,404,128	+		LRK54_RS06530	0.26	+0.5
1,404,128	+		LRK54_RS06530	0.26	+0.9
1,404,128	+		LRK54_RS06530	0.26	+0.6
1,404,128	+		LRK54_RS06530	0.26	+0.7
1,404,128	+		LRK54_RS06530	0.26	+0.7
1,404,128	+		LRK54_RS06530	0.26	+0.7
1,404,128	+		LRK54_RS06530	0.26	+1.1
1,404,128	+		LRK54_RS06530	0.26	+1.0
1,404,128	+		LRK54_RS06530	0.26	+1.6
1,404,128	+		LRK54_RS06530	0.26	+0.9
1,404,128	+		LRK54_RS06530	0.26	+0.8
1,404,128	+		LRK54_RS06530	0.26	+2.3
1,404,128	+		LRK54_RS06530	0.26	+1.7
1,404,128	+		LRK54_RS06530	0.26	+1.3
1,404,128	+		LRK54_RS06530	0.26	+0.1
1,404,128	+		LRK54_RS06530	0.26	+0.8
1,404,128	+		LRK54_RS06530	0.26	+0.7
1,404,128	+		LRK54_RS06530	0.26	+0.9
1,404,128	+		LRK54_RS06530	0.26	+0.6
1,404,128	+		LRK54_RS06530	0.26	+0.8
1,404,128	+		LRK54_RS06530	0.26	-0.1
1,404,128	+		LRK54_RS06530	0.26	+0.4
1,404,128	+		LRK54_RS06530	0.26	+0.5
1,404,128	+		LRK54_RS06530	0.26	+0.8
1,404,128	+		LRK54_RS06530	0.26	+0.7
1,404,128	+		LRK54_RS06530	0.26	+0.1
1,404,128	+		LRK54_RS06530	0.26	+1.8
1,404,128	+		LRK54_RS06530	0.26	+0.9
1,404,128	+		LRK54_RS06530	0.26	+1.1
1,404,128	+		LRK54_RS06530	0.26	+0.4
1,404,128	+		LRK54_RS06530	0.26	+0.1
1,404,128	+		LRK54_RS06530	0.26	+0.4
1,404,128	+		LRK54_RS06530	0.26	+0.3
1,404,128	+		LRK54_RS06530	0.26	+0.7
1,404,128	+		LRK54_RS06530	0.26	+0.2
1,404,129	-		LRK54_RS06530	0.26	+0.9
1,404,129	-		LRK54_RS06530	0.26	+1.2
1,404,129	-		LRK54_RS06530	0.26	+0.7
1,404,129	-		LRK54_RS06530	0.26	+0.6
1,404,129	-		LRK54_RS06530	0.26	+2.0
1,404,129	-		LRK54_RS06530	0.26	+1.1
1,404,129	-		LRK54_RS06530	0.26	+1.0
1,404,129	-		LRK54_RS06530	0.26	+0.8
1,404,129	-		LRK54_RS06530	0.26	-0.3
1,404,129	-		LRK54_RS06530	0.26	+1.0
1,404,129	-		LRK54_RS06530	0.26	+0.3
1,404,129	-		LRK54_RS06530	0.26	+0.5
1,404,129	-		LRK54_RS06530	0.26	+0.3
1,404,129	-		LRK54_RS06530	0.26	+0.8
1,404,129	-		LRK54_RS06530	0.26	+1.1
1,404,129	-		LRK54_RS06530	0.26	+1.1
1,404,129	-		LRK54_RS06530	0.26	+1.3
1,404,129	-		LRK54_RS06530	0.26	+0.8
1,404,129	-		LRK54_RS06530	0.26	+0.7
1,404,129	-		LRK54_RS06530	0.26	+0.6
1,404,129	-		LRK54_RS06530	0.26	+0.9
1,404,129	-		LRK54_RS06530	0.26	+2.3
1,404,129	-		LRK54_RS06530	0.26	+0.6
1,404,129	-		LRK54_RS06530	0.26	+0.7
1,404,129	-		LRK54_RS06530	0.26	+1.0
1,404,129	-		LRK54_RS06530	0.26	+0.8
1,404,129	-		LRK54_RS06530	0.26	+0.8
1,404,129	-		LRK54_RS06530	0.26	+0.6
1,404,129	-		LRK54_RS06530	0.26	+1.3
1,404,129	-		LRK54_RS06530	0.26	+0.4
1,404,129	-		LRK54_RS06530	0.26	+1.0
1,404,129	-		LRK54_RS06530	0.26	+3.3
1,404,129	-		LRK54_RS06530	0.26	+0.5
1,404,129	-		LRK54_RS06530	0.26	-0.2
1,404,368	-		LRK54_RS06530	0.51	+0.0
1,404,447	+		LRK54_RS06530	0.60	+0.8
1,404,447	+		LRK54_RS06530	0.60	+1.1
1,404,447	+		LRK54_RS06530	0.60	+0.4
1,404,447	+		LRK54_RS06530	0.60	+0.9
1,404,447	+		LRK54_RS06530	0.60	+2.3
1,404,447	+		LRK54_RS06530	0.60	+0.9
1,404,447	+		LRK54_RS06530	0.60	+0.1
1,404,447	+		LRK54_RS06530	0.60	+0.8
1,404,447	+		LRK54_RS06530	0.60	+0.3
1,404,447	+		LRK54_RS06530	0.60	+1.3
1,404,447	+		LRK54_RS06530	0.60	+1.1
1,404,447	+		LRK54_RS06530	0.60	+0.2
1,404,447	+		LRK54_RS06530	0.60	+0.4
1,404,447	+		LRK54_RS06530	0.60	+0.5
1,404,447	+		LRK54_RS06530	0.60	+0.1
1,404,447	+		LRK54_RS06530	0.60	+1.0
1,404,447	+		LRK54_RS06530	0.60	+0.9
1,404,447	+		LRK54_RS06530	0.60	+1.1
1,404,447	+		LRK54_RS06530	0.60	+0.8
1,404,447	+		LRK54_RS06530	0.60	+1.3
1,404,447	+		LRK54_RS06530	0.60	+1.1
1,404,447	+		LRK54_RS06530	0.60	-0.7
1,404,447	+		LRK54_RS06530	0.60	+0.5
1,404,447	+		LRK54_RS06530	0.60	+1.3
1,404,447	+		LRK54_RS06530	0.60	+1.2
1,404,447	+		LRK54_RS06530	0.60	+0.4
1,404,448	-		LRK54_RS06530	0.60	+1.0
1,404,448	-		LRK54_RS06530	0.60	+1.1
1,404,448	-		LRK54_RS06530	0.60	+1.7
1,404,448	-		LRK54_RS06530	0.60	+0.5
1,404,448	-		LRK54_RS06530	0.60	+0.9
1,404,448	-		LRK54_RS06530	0.60	+0.3
1,404,448	-		LRK54_RS06530	0.60	+0.4
1,404,448	-		LRK54_RS06530	0.60	+1.8
1,404,448	-		LRK54_RS06530	0.60	+0.5
1,404,448	-		LRK54_RS06530	0.60	+0.6
1,404,448	-		LRK54_RS06530	0.60	+0.6
1,404,448	-		LRK54_RS06530	0.60	+1.2
1,404,448	-		LRK54_RS06530	0.60	+1.0
1,404,448	-		LRK54_RS06530	0.60	+0.8
1,404,448	-		LRK54_RS06530	0.60	-0.1
1,404,448	-		LRK54_RS06530	0.60	+0.8
1,404,448	-		LRK54_RS06530	0.60	+0.7
1,404,448	-		LRK54_RS06530	0.60	+0.3
1,404,448	-		LRK54_RS06530	0.60	-0.8
1,404,448	-		LRK54_RS06530	0.60	+2.3
1,404,448	-		LRK54_RS06530	0.60	+0.7
1,404,448	-		LRK54_RS06530	0.60	+0.3
1,404,448	-		LRK54_RS06530	0.60	+0.0
1,404,448	-		LRK54_RS06530	0.60	+1.3
1,404,448	-		LRK54_RS06530	0.60	+0.7
1,404,448	-		LRK54_RS06530	0.60	+0.9
1,404,448	-		LRK54_RS06530	0.60	+0.8
1,404,448	-		LRK54_RS06530	0.60	+1.2
1,404,448	-		LRK54_RS06530	0.60	+0.4
1,404,448	-		LRK54_RS06530	0.60	+1.3
1,404,448	-		LRK54_RS06530	0.60	+0.2
1,404,448	-		LRK54_RS06530	0.60	+0.6
1,404,465	+		LRK54_RS06530	0.62	+0.7
1,404,465	+		LRK54_RS06530	0.62	+0.8
1,404,465	+		LRK54_RS06530	0.62	+0.8
1,404,465	+		LRK54_RS06530	0.62	+1.1
1,404,465	+		LRK54_RS06530	0.62	+1.1
1,404,465	+		LRK54_RS06530	0.62	+0.9
1,404,466	-		LRK54_RS06530	0.62	+0.0
1,404,466	-		LRK54_RS06530	0.62	+0.8
1,404,466	-		LRK54_RS06530	0.62	-0.8
1,404,466	-		LRK54_RS06530	0.62	+0.6
1,404,466	-		LRK54_RS06530	0.62	+0.6
1,404,466	-		LRK54_RS06530	0.62	+0.4
1,404,466	-		LRK54_RS06530	0.62	-0.7
1,404,466	-		LRK54_RS06530	0.62	+0.7
1,404,466	-		LRK54_RS06530	0.62	+2.9
1,404,466	-		LRK54_RS06530	0.62	+1.2
1,404,534	+		LRK54_RS06530	0.69	+0.6
1,404,534	+		LRK54_RS06530	0.69	+1.2
1,404,534	+		LRK54_RS06530	0.69	+1.0
1,404,534	+		LRK54_RS06530	0.69	-0.8
1,404,534	+		LRK54_RS06530	0.69	+0.6
1,404,534	+		LRK54_RS06530	0.69	+0.9
1,404,534	+		LRK54_RS06530	0.69	+1.4
1,404,534	+		LRK54_RS06530	0.69	+0.6
1,404,534	+		LRK54_RS06530	0.69	+0.3
1,404,534	+		LRK54_RS06530	0.69	-0.3
1,404,534	+		LRK54_RS06530	0.69	+1.7
1,404,534	+		LRK54_RS06530	0.69	+2.3
1,404,534	+		LRK54_RS06530	0.69	+0.3
1,404,534	+		LRK54_RS06530	0.69	+1.4
1,404,534	+		LRK54_RS06530	0.69	+0.3
1,404,534	+		LRK54_RS06530	0.69	-0.3
1,404,534	+		LRK54_RS06530	0.69	+1.6
1,404,534	+		LRK54_RS06530	0.69	+0.1
1,404,534	+		LRK54_RS06530	0.69	+0.8
1,404,534	+		LRK54_RS06530	0.69	+0.3
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+1.2
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+2.7
1,404,534	+		LRK54_RS06530	0.69	+1.0
1,404,534	+		LRK54_RS06530	0.69	+0.8
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+0.4
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+0.9
1,404,534	+		LRK54_RS06530	0.69	-0.3
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+0.4
1,404,534	+		LRK54_RS06530	0.69	+0.7
1,404,534	+		LRK54_RS06530	0.69	+1.1
1,404,535	-		LRK54_RS06530	0.69	+0.6
1,404,535	-		LRK54_RS06530	0.69	+0.0
1,404,535	-		LRK54_RS06530	0.69	+0.6
1,404,535	-		LRK54_RS06530	0.69	+0.9
1,404,535	-		LRK54_RS06530	0.69	-1.0
1,404,535	-		LRK54_RS06530	0.69	+0.9
1,404,535	-		LRK54_RS06530	0.69	+0.2
1,404,535	-		LRK54_RS06530	0.69	+1.4
1,404,535	-		LRK54_RS06530	0.69	+1.3
1,404,535	-		LRK54_RS06530	0.69	+0.8
1,404,535	-		LRK54_RS06530	0.69	-0.3
1,404,535	-		LRK54_RS06530	0.69	+0.8
1,404,535	-		LRK54_RS06530	0.69	+0.7
1,404,535	-		LRK54_RS06530	0.69	+0.5
1,404,535	-		LRK54_RS06530	0.69	+1.1
1,404,535	-		LRK54_RS06530	0.69	+0.3
1,404,535	-		LRK54_RS06530	0.69	+1.1
1,404,535	-		LRK54_RS06530	0.69	+0.4
1,404,535	-		LRK54_RS06530	0.69	+0.2
1,404,535	-		LRK54_RS06530	0.69	+0.3
1,404,535	-		LRK54_RS06530	0.69	-1.0
1,404,535	-		LRK54_RS06530	0.69	-0.1
1,404,535	-		LRK54_RS06530	0.69	+1.0
1,404,648	+		LRK54_RS06530	0.81	+1.0
1,404,649	-		LRK54_RS06530	0.81	+0.3
1,404,771	+				+1.2
1,404,771	+				+1.4
1,404,771	+				+1.0
1,404,771	+				+0.6
1,404,771	+				+1.5
1,404,771	+				+1.2
1,404,772	-				+0.1
1,404,772	-				+0.7
1,404,772	-				+0.9
1,404,772	-				+1.0
1,404,924	+				+0.2
1,404,925	-				+0.6
1,404,925	-				+0.0
1,405,038	+		LRK54_RS06535	0.11	-0.7
1,405,038	+		LRK54_RS06535	0.11	+0.5
1,405,038	+		LRK54_RS06535	0.11	+0.4
1,405,038	+		LRK54_RS06535	0.11	-1.4
1,405,038	+		LRK54_RS06535	0.11	+3.0
1,405,038	+		LRK54_RS06535	0.11	-0.0
1,405,038	+		LRK54_RS06535	0.11	+0.7
1,405,038	+		LRK54_RS06535	0.11	+0.6
1,405,038	+		LRK54_RS06535	0.11	-0.5
1,405,038	+		LRK54_RS06535	0.11	-1.0
1,405,038	+		LRK54_RS06535	0.11	+0.5
1,405,038	+		LRK54_RS06535	0.11	+1.0
1,405,038	+		LRK54_RS06535	0.11	-0.3
1,405,038	+		LRK54_RS06535	0.11	-0.3
1,405,039	-		LRK54_RS06535	0.11	+0.5
1,405,039	-		LRK54_RS06535	0.11	+2.0
1,405,039	-		LRK54_RS06535	0.11	-0.5
1,405,039	-		LRK54_RS06535	0.11	+0.6
1,405,088	+		LRK54_RS06535	0.14	-0.2
1,405,088	+		LRK54_RS06535	0.14	+1.7
1,405,089	-		LRK54_RS06535	0.14	+0.5
1,405,215	+		LRK54_RS06535	0.23	+0.9
1,405,215	+		LRK54_RS06535	0.23	+0.5
1,405,215	+		LRK54_RS06535	0.23	-0.1
1,405,215	+		LRK54_RS06535	0.23	-0.8
1,405,215	+		LRK54_RS06535	0.23	+0.1
1,405,215	+		LRK54_RS06535	0.23	-0.4
1,405,215	+		LRK54_RS06535	0.23	+0.7
1,405,215	+		LRK54_RS06535	0.23	-0.4
1,405,216	-		LRK54_RS06535	0.23	-0.3
1,405,216	-		LRK54_RS06535	0.23	-1.0
1,405,216	-		LRK54_RS06535	0.23	+0.6
1,405,216	-		LRK54_RS06535	0.23	+0.6
1,405,216	-		LRK54_RS06535	0.23	+0.4
1,405,216	-		LRK54_RS06535	0.23	-0.3
1,405,216	-		LRK54_RS06535	0.23	+1.2
1,405,308	+		LRK54_RS06535	0.29	+0.5
1,405,308	+		LRK54_RS06535	0.29	-0.5
1,405,308	+		LRK54_RS06535	0.29	+0.3
1,405,308	+		LRK54_RS06535	0.29	+1.3
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1,406,359	-				+0.3
1,406,359	-				+0.0
1,406,359	-				+0.4
1,406,359	-				+0.5
1,406,359	-				-0.2
1,406,359	-				+0.0
1,406,359	-				+1.1
1,406,359	-				+0.5
1,406,359	-				-0.3
1,406,359	-				+0.8
1,406,359	-				+1.1
1,406,359	-				-0.2
1,406,359	-				-0.3
1,406,359	-				+0.3
1,406,407	+				+0.7
1,406,407	+				-1.1
1,406,407	+				+1.0
1,406,407	+				-0.3
1,406,408	-				-0.5
1,406,408	-				+2.3
1,406,522	-				-2.3
1,406,522	-				-1.0
1,406,522	-				-1.3