Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS06475

Experiment: R2A with arsenate 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with arsenate 15.625 mM
1,391,587	+		LRK54_RS06470	0.58	-1.0
1,391,588	-		LRK54_RS06470	0.58	-1.0
1,391,588	-		LRK54_RS06470	0.58	+0.0
1,391,754	+		LRK54_RS06470	0.65	-0.5
1,391,754	+		LRK54_RS06470	0.65	-1.0
1,391,754	+		LRK54_RS06470	0.65	-1.2
1,391,754	+		LRK54_RS06470	0.65	+0.0
1,391,754	+		LRK54_RS06470	0.65	-1.0
1,391,755	-		LRK54_RS06470	0.65	-2.6
1,391,755	-		LRK54_RS06470	0.65	+1.3
1,391,755	-		LRK54_RS06470	0.65	-1.1
1,391,755	-		LRK54_RS06470	0.65	-2.5
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	+0.3
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	-0.8
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	-0.8
1,391,755	-		LRK54_RS06470	0.65	-0.7
1,391,755	-		LRK54_RS06470	0.65	+0.8
1,391,755	-		LRK54_RS06470	0.65	-0.5
1,391,755	-		LRK54_RS06470	0.65	-1.5
1,391,845	-		LRK54_RS06470	0.69	+0.5
1,391,845	-		LRK54_RS06470	0.69	+0.3
1,391,845	-		LRK54_RS06470	0.69	-1.5
1,391,874	+		LRK54_RS06470	0.70	-1.2
1,391,874	+		LRK54_RS06470	0.70	-1.5
1,391,875	-		LRK54_RS06470	0.70	-3.0
1,391,934	+		LRK54_RS06470	0.73	-1.1
1,391,934	+		LRK54_RS06470	0.73	-0.5
1,391,935	-		LRK54_RS06470	0.73	-0.7
1,391,935	-		LRK54_RS06470	0.73	-0.5
1,391,943	+		LRK54_RS06470	0.73	-0.2
1,391,944	-		LRK54_RS06470	0.73	-1.9
1,391,944	-		LRK54_RS06470	0.73	-0.1
1,392,090	+		LRK54_RS06470	0.80	-2.2
1,392,090	+		LRK54_RS06470	0.80	-1.0
1,392,090	+		LRK54_RS06470	0.80	+0.0
1,392,090	+		LRK54_RS06470	0.80	-1.0
1,392,090	+		LRK54_RS06470	0.80	+0.8
1,392,090	+		LRK54_RS06470	0.80	-3.0
1,392,090	+		LRK54_RS06470	0.80	-0.2
1,392,090	+		LRK54_RS06470	0.80	-3.2
1,392,090	+		LRK54_RS06470	0.80	+1.0
1,392,090	+		LRK54_RS06470	0.80	+0.8
1,392,090	+		LRK54_RS06470	0.80	-1.0
1,392,090	+		LRK54_RS06470	0.80	-2.7
1,392,090	+		LRK54_RS06470	0.80	+0.0
1,392,090	+		LRK54_RS06470	0.80	-2.7
1,392,090	+		LRK54_RS06470	0.80	-0.7
1,392,090	+		LRK54_RS06470	0.80	-1.1
1,392,090	+		LRK54_RS06470	0.80	-2.6
1,392,090	+				+0.0
1,392,090	+		LRK54_RS06470	0.80	-1.4
1,392,091	-		LRK54_RS06470	0.80	-0.9
1,392,091	-		LRK54_RS06470	0.80	-1.1
1,392,091	-		LRK54_RS06470	0.80	-1.4
1,392,091	-		LRK54_RS06470	0.80	-0.4
1,392,091	-		LRK54_RS06470	0.80	-1.2
1,392,091	-		LRK54_RS06470	0.80	-0.7
1,392,091	-		LRK54_RS06470	0.80	-0.5
1,392,091	-		LRK54_RS06470	0.80	-0.8
1,392,091	-		LRK54_RS06470	0.80	-0.2
1,392,091	-		LRK54_RS06470	0.80	-1.1
1,392,091	-		LRK54_RS06470	0.80	+0.0
1,392,091	-		LRK54_RS06470	0.80	+2.3
1,392,091	-		LRK54_RS06470	0.80	-1.9
1,392,091	-		LRK54_RS06470	0.80	-2.7
1,392,091	-		LRK54_RS06470	0.80	+0.8
1,392,091	-		LRK54_RS06470	0.80	-0.1
1,392,091	-		LRK54_RS06470	0.80	-0.8
1,392,141	+		LRK54_RS06470	0.82	-1.9
1,392,141	+		LRK54_RS06470	0.82	-1.7
1,392,141	+		LRK54_RS06470	0.82	-0.8
1,392,141	+		LRK54_RS06470	0.82	-2.7
1,392,141	+		LRK54_RS06470	0.82	+0.8
1,392,142	-		LRK54_RS06470	0.82	-2.2
1,392,142	-		LRK54_RS06470	0.82	+0.0
1,392,142	-		LRK54_RS06470	0.82	-2.0
1,392,142	-		LRK54_RS06470	0.82	-1.5
1,392,142	-		LRK54_RS06470	0.82	-2.5
1,392,142	-		LRK54_RS06470	0.82	+0.8
1,392,142	-		LRK54_RS06470	0.82	-1.8
1,392,171	+		LRK54_RS06470	0.84	+1.0
1,392,171	+		LRK54_RS06470	0.84	-0.9
1,392,171	+		LRK54_RS06470	0.84	-1.8
1,392,171	+		LRK54_RS06470	0.84	-0.2
1,392,171	+		LRK54_RS06470	0.84	-1.1
1,392,171	+		LRK54_RS06470	0.84	+0.8
1,392,171	+		LRK54_RS06470	0.84	-2.6
1,392,171	+		LRK54_RS06470	0.84	+0.3
1,392,172	-		LRK54_RS06470	0.84	-0.5
1,392,172	-		LRK54_RS06470	0.84	-2.2
1,392,172	-		LRK54_RS06470	0.84	-0.8
1,392,172	-		LRK54_RS06470	0.84	-0.5
1,392,172	-		LRK54_RS06470	0.84	-1.3
1,392,172	-		LRK54_RS06470	0.84	-2.1
1,392,172	-		LRK54_RS06470	0.84	-1.0
1,392,172	-		LRK54_RS06470	0.84	-0.7
1,392,172	-		LRK54_RS06470	0.84	-0.5
1,392,172	-		LRK54_RS06470	0.84	+0.8
1,392,172	-		LRK54_RS06470	0.84	-1.7
1,392,172	-		LRK54_RS06470	0.84	-1.1
1,392,306	+		LRK54_RS06470	0.90	+0.3
1,392,306	+		LRK54_RS06470	0.90	-0.7
1,392,306	+		LRK54_RS06470	0.90	-1.0
1,392,306	+		LRK54_RS06470	0.90	-1.5
1,392,306	+		LRK54_RS06470	0.90	-1.0
1,392,306	+		LRK54_RS06470	0.90	-2.7
1,392,306	+		LRK54_RS06470	0.90	-2.7
1,392,307	-		LRK54_RS06470	0.90	-0.1
1,392,307	-		LRK54_RS06470	0.90	-1.1
1,392,307	-		LRK54_RS06470	0.90	+1.5
1,392,307	-		LRK54_RS06470	0.90	-0.8
1,392,307	-		LRK54_RS06470	0.90	+0.7
1,392,315	+				+0.5
1,392,315	+				-1.0
1,392,315	+				-0.8
1,392,315	+				-0.5
1,392,315	+				-1.4
1,392,315	+				-1.5
1,392,315	+				-0.5
1,392,315	+				-2.0
1,392,316	-				-1.1
1,392,316	-				+0.0
1,392,316	-				+0.0
1,392,316	-				-0.7
1,392,316	-				-1.3
1,392,316	-				-1.5
1,392,316	-				-1.0
1,392,316	-				-0.3
1,392,316	-				-1.8
1,392,316	-				-0.8
1,392,316	-				-0.8
1,392,316	-				-0.8
1,392,357	+				-1.8
1,392,358	-				-1.3
1,392,358	-				-0.8
1,392,596	+				-0.5
1,392,596	+				-1.1
1,392,596	+				-3.4
1,392,596	+				-3.4
1,392,596	+				-0.7
1,392,596	+				-2.1
1,392,596	+				-2.3
1,392,596	+				+0.3
1,392,597	-				-0.8
1,392,597	-				-1.1
1,392,597	-				-2.5
1,392,597	-				-3.7
1,392,597	-				-1.3
1,392,689	+		LRK54_RS06475	0.14	-0.8
1,392,728	+		LRK54_RS06475	0.18	+2.3
1,392,728	+		LRK54_RS06475	0.18	-1.3
1,392,728	+		LRK54_RS06475	0.18	-1.8
1,392,729	-		LRK54_RS06475	0.18	-1.2
1,392,729	-		LRK54_RS06475	0.18	-1.1
1,392,729	-		LRK54_RS06475	0.18	-1.0
1,392,891	-		LRK54_RS06475	0.34	-0.3
1,392,891	-		LRK54_RS06475	0.34	-2.3
1,392,891	-		LRK54_RS06475	0.34	-2.5
1,392,891	-		LRK54_RS06475	0.34	-2.3
1,392,891	-		LRK54_RS06475	0.34	-2.8
1,392,891	-		LRK54_RS06475	0.34	-0.3
1,393,139	+		LRK54_RS06475	0.59	-1.8
1,393,139	+		LRK54_RS06475	0.59	-2.8
1,393,139	+		LRK54_RS06475	0.59	-1.1
1,393,139	+		LRK54_RS06475	0.59	+0.0
1,393,139	+		LRK54_RS06475	0.59	-2.2
1,393,139	+		LRK54_RS06475	0.59	-1.4
1,393,139	+		LRK54_RS06475	0.59	-1.7
1,393,139	+		LRK54_RS06475	0.59	-2.4
1,393,139	+		LRK54_RS06475	0.59	-0.5
1,393,139	+		LRK54_RS06475	0.59	-0.5
1,393,139	+		LRK54_RS06475	0.59	-0.8
1,393,139	+		LRK54_RS06475	0.59	-1.7
1,393,139	+		LRK54_RS06475	0.59	-1.7
1,393,139	+		LRK54_RS06475	0.59	-2.5
1,393,139	+		LRK54_RS06475	0.59	-1.0
1,393,139	+		LRK54_RS06475	0.59	-2.1
1,393,140	-		LRK54_RS06475	0.59	+1.3
1,393,140	-		LRK54_RS06475	0.59	-2.2
1,393,140	-		LRK54_RS06475	0.59	-2.0
1,393,140	-		LRK54_RS06475	0.59	-2.4
1,393,140	-		LRK54_RS06475	0.59	-2.8
1,393,140	-		LRK54_RS06475	0.59	-2.3
1,393,140	-		LRK54_RS06475	0.59	-0.3
1,393,140	-		LRK54_RS06475	0.59	-0.8
1,393,140	-		LRK54_RS06475	0.59	-0.8
1,393,140	-		LRK54_RS06475	0.59	-2.2
1,393,140	-		LRK54_RS06475	0.59	-3.9
1,393,140	-		LRK54_RS06475	0.59	-3.8
1,393,140	-		LRK54_RS06475	0.59	-1.8
1,393,140	-		LRK54_RS06475	0.59	-3.2
1,393,140	-		LRK54_RS06475	0.59	-1.4
1,393,140	-		LRK54_RS06475	0.59	-1.3
1,393,140	-		LRK54_RS06475	0.59	-3.4
1,393,556	+				-0.8
1,393,556	+				-0.8
1,393,556	+				-1.8
1,393,556	+				-2.3
1,393,556	+				-0.3
1,393,556	+				+0.0
1,393,556	+				-1.0
1,393,556	+				-1.7
1,393,556	+				+0.2
1,393,556	+				-0.3
1,393,556	+				-2.1
1,393,556	+				-0.8
1,393,556	+				-1.4
1,393,556	+				-1.8
1,393,556	+				-0.5
1,393,556	+				-1.0
1,393,556	+				-2.3
1,393,556	+				-0.7
1,393,556	+				-1.8
1,393,556	+				-2.3
1,393,557	-				+1.7
1,393,557	-				+0.2
1,393,557	-				-1.4
1,393,557	-				-0.6
1,393,557	-				+1.7
1,393,557	-				+0.4
1,393,557	-				+0.3
1,393,557	-				-0.2
1,393,557	-				-1.8
1,393,557	-				-0.8
1,393,557	-				-0.1
1,393,557	-				+0.5
1,393,557	-				-0.2
1,393,557	-				+0.9
1,393,557	-				-0.1
1,393,557	-				+0.9
1,393,557	-				+0.4
1,393,557	-				+0.4
1,393,557	-				-0.3
1,393,557	-				-0.8
1,393,557	-				-0.3
1,393,557	-				-1.6
1,393,557	-				-0.5
1,393,557	-				+1.2
1,393,557	-				-2.1
1,393,557	-				+0.0
1,393,557	-				-0.2
1,393,557	-				+0.1
1,393,557	-				-0.4
1,393,557	-				-1.6
1,393,557	-				-0.5
1,393,557	-				-1.2
1,393,696	+		LRK54_RS06480	0.22	-1.4
1,393,696	+		LRK54_RS06480	0.22	-2.5
1,393,696	+		LRK54_RS06480	0.22	-2.5
1,393,696	+		LRK54_RS06480	0.22	-2.4
1,393,696	+		LRK54_RS06480	0.22	-1.1
1,393,696	+		LRK54_RS06480	0.22	-0.1
1,393,697	-		LRK54_RS06480	0.22	-1.3
1,393,697	-		LRK54_RS06480	0.22	-1.6
1,393,697	-		LRK54_RS06480	0.22	-2.7
1,393,697	-		LRK54_RS06480	0.22	-2.1
1,393,697	-		LRK54_RS06480	0.22	-3.2
1,393,697	-		LRK54_RS06480	0.22	+0.3
1,393,697	-		LRK54_RS06480	0.22	-1.9
1,393,724	+		LRK54_RS06480	0.26	-2.2
1,393,724	+		LRK54_RS06480	0.26	+0.9
1,393,724	+		LRK54_RS06480	0.26	-0.5
1,393,724	+		LRK54_RS06480	0.26	-0.9
1,393,725	-		LRK54_RS06480	0.27	-0.3
1,393,725	-		LRK54_RS06480	0.27	-0.5
1,393,725	-		LRK54_RS06480	0.27	-3.4
1,393,725	-		LRK54_RS06480	0.27	-1.3
1,393,725	-		LRK54_RS06480	0.27	-1.7
1,393,725	-		LRK54_RS06480	0.27	-2.7
1,393,845	+		LRK54_RS06480	0.46	+1.7
1,393,847	+		LRK54_RS06480	0.47	-2.1
1,393,847	+		LRK54_RS06480	0.47	-2.4
1,393,847	+		LRK54_RS06480	0.47	-1.1
1,393,847	+		LRK54_RS06480	0.47	+0.0
1,393,847	+		LRK54_RS06480	0.47	-0.3
1,393,847	+		LRK54_RS06480	0.47	-1.7
1,393,847	+		LRK54_RS06480	0.47	+2.9
1,393,847	+		LRK54_RS06480	0.47	-0.3
1,393,847	+		LRK54_RS06480	0.47	-1.5
1,393,847	+		LRK54_RS06480	0.47	+0.7
1,393,848	-		LRK54_RS06480	0.47	+0.0
1,393,848	-		LRK54_RS06480	0.47	+0.0
1,393,848	-		LRK54_RS06480	0.47	-3.3
1,393,848	-		LRK54_RS06480	0.47	-0.7
1,393,848	-		LRK54_RS06480	0.47	-2.6
1,393,848	-		LRK54_RS06480	0.47	-0.3
1,393,848	-		LRK54_RS06480	0.47	-1.6
1,393,848	-		LRK54_RS06480	0.47	-1.4
1,393,848	-		LRK54_RS06480	0.47	+0.2
1,393,848	-		LRK54_RS06480	0.47	+1.3
1,394,006	+		LRK54_RS06480	0.73	-0.5
1,394,006	+		LRK54_RS06480	0.73	-0.8
1,394,006	+		LRK54_RS06480	0.73	-1.3
1,394,006	+		LRK54_RS06480	0.73	-1.3
1,394,006	+		LRK54_RS06480	0.73	-1.3
1,394,006	+		LRK54_RS06480	0.73	+1.3
1,394,006	+		LRK54_RS06480	0.73	-0.7
1,394,006	+		LRK54_RS06480	0.73	-1.4
1,394,006	+		LRK54_RS06480	0.73	-2.3
1,394,006	+		LRK54_RS06480	0.73	-2.4
1,394,006	+		LRK54_RS06480	0.73	-0.8
1,394,006	+		LRK54_RS06480	0.73	-2.9
1,394,006	+		LRK54_RS06480	0.73	-0.3
1,394,006	+		LRK54_RS06480	0.73	-2.5
1,394,006	+		LRK54_RS06480	0.73	-2.3
1,394,006	+		LRK54_RS06480	0.73	-1.4
1,394,006	+		LRK54_RS06480	0.73	-1.7
1,394,006	+		LRK54_RS06480	0.73	-2.5
1,394,006	+		LRK54_RS06480	0.73	-0.7
1,394,006	+		LRK54_RS06480	0.73	-0.1
1,394,006	+		LRK54_RS06480	0.73	-0.5
1,394,006	+		LRK54_RS06480	0.73	+0.0
1,394,006	+		LRK54_RS06480	0.73	-1.8
1,394,007	-		LRK54_RS06480	0.73	-2.1
1,394,007	-		LRK54_RS06480	0.73	-1.7
1,394,007	-		LRK54_RS06480	0.73	+0.6
1,394,007	-		LRK54_RS06480	0.73	-2.5
1,394,007	-		LRK54_RS06480	0.73	-1.1
1,394,007	-		LRK54_RS06480	0.73	-1.0
1,394,007	-		LRK54_RS06480	0.73	-1.0
1,394,007	-		LRK54_RS06480	0.73	-0.6
1,394,007	-		LRK54_RS06480	0.73	+0.0
1,394,007	-		LRK54_RS06480	0.73	-0.7
1,394,007	-		LRK54_RS06480	0.73	-2.3
1,394,007	-		LRK54_RS06480	0.73	-0.7
1,394,007	-		LRK54_RS06480	0.73	-2.8
1,394,007	-		LRK54_RS06480	0.73	-3.7
1,394,007	-		LRK54_RS06480	0.73	-1.3
1,394,007	-		LRK54_RS06480	0.73	-2.1
1,394,007	-		LRK54_RS06480	0.73	-1.7
1,394,007	-		LRK54_RS06480	0.73	-1.1
1,394,007	-		LRK54_RS06480	0.73	-0.8
1,394,007	-		LRK54_RS06480	0.73	-1.4
1,394,189	+				-0.5
1,394,189	+				-1.5
1,394,190	-				-3.1