Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05550

Experiment: R2A with arsenate 15.625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with arsenate 15.625 mM
1,198,063	+				-0.8
1,198,063	+				-0.7
1,198,063	+				-1.5
1,198,063	+				-0.2
1,198,064	-				-1.8
1,198,064	-				-0.2
1,198,064	-				-0.3
1,198,064	-				-0.4
1,198,125	+				-1.0
1,198,125	+				+0.4
1,198,125	+				+0.9
1,198,125	+				-1.4
1,198,125	+				-0.3
1,198,125	+				-0.6
1,198,126	-				+0.4
1,198,126	-				+0.4
1,198,126	-				-0.4
1,198,145	+				+0.4
1,198,146	-				-0.2
1,198,146	-				-0.2
1,198,146	-				-0.2
1,198,218	-				+0.4
1,198,235	+				+0.4
1,198,235	+				-1.0
1,198,943	+				+0.0
1,198,943	+				-0.2
1,198,943	+				-0.9
1,198,943	+				+0.5
1,198,944	-				+1.0
1,198,944	-				-0.7
1,198,957	+				+0.3
1,198,957	+				+0.5
1,198,957	+				-1.0
1,198,957	+				-0.6
1,198,957	+				+1.0
1,198,957	+				+0.5
1,198,957	+				-1.0
1,198,957	+				+0.9
1,198,957	+				-0.6
1,198,957	+				-1.6
1,198,957	+				-1.2
1,198,958	-				-0.8
1,198,958	-				-0.4
1,198,961	+				-0.4
1,198,961	+				+0.5
1,198,961	+				-1.3
1,198,961	+				-1.1
1,198,961	+				-0.3
1,198,961	+				-0.8
1,198,961	+				-0.1
1,198,961	+				+1.1
1,198,961	+				+1.4
1,198,961	+				+0.4
1,198,961	+				+0.0
1,198,961	+				-0.2
1,198,961	+				-0.1
1,198,961	+				-2.3
1,198,961	+				-0.7
1,198,961	+				+1.1
1,198,961	+				+0.4
1,198,961	+				-0.7
1,198,961	+				-0.7
1,198,961	+				+0.1
1,198,961	+				+0.2
1,198,961	+				+0.0
1,198,961	+				-0.4
1,198,961	+				-0.4
1,198,961	+				-0.1
1,198,961	+				+0.1
1,198,961	+				-0.1
1,198,962	-				+0.0
1,198,962	-				+0.5
1,198,962	-				-0.6
1,198,962	-				+0.6
1,198,962	-				-1.2
1,198,962	-				-1.0
1,198,962	-				-1.3
1,198,962	-				-1.0
1,198,962	-				-1.2
1,198,962	-				-2.9
1,199,033	+				-1.1
1,199,033	+				+0.4
1,199,033	+				+0.6
1,199,033	+				-0.2
1,199,033	+				+0.3
1,199,033	+				+0.5
1,199,033	+				-1.4
1,199,034	-				-0.1
1,199,034	-				-0.9
1,199,034	-				-1.3
1,199,444	+		LRK54_RS05550	0.41	+0.2
1,199,708	+		LRK54_RS05550	0.69	-1.0
1,199,708	+		LRK54_RS05550	0.69	-0.8
1,199,709	-		LRK54_RS05550	0.69	-0.4
1,199,709	-		LRK54_RS05550	0.69	+1.4
1,199,771	+		LRK54_RS05550	0.76	-0.8
1,199,828	+		LRK54_RS05550	0.82	-1.2
1,199,828	+				-0.4
1,199,828	+		LRK54_RS05550	0.82	-1.0
1,199,828	+		LRK54_RS05550	0.82	+0.4
1,199,829	-		LRK54_RS05550	0.82	-0.2
1,199,829	-		LRK54_RS05550	0.82	+0.4
1,199,829	-		LRK54_RS05550	0.82	-0.2
1,199,829	-		LRK54_RS05550	0.82	+0.4
1,199,829	-		LRK54_RS05550	0.82	+1.4
1,200,130	+				-2.1
1,200,130	+				+2.4
1,200,130	+				-0.2
1,200,130	+				+0.0
1,200,130	+				-2.3
1,200,130	+				+0.4
1,200,130	+				+1.2
1,200,130	+				-1.5
1,200,130	+				-0.4
1,200,130	+				+1.9
1,200,130	+				-1.5
1,200,130	+				-0.8
1,200,130	+				+0.1
1,200,130	+				-0.3
1,200,130	+				-0.3
1,200,130	+				-0.1
1,200,131	-				+0.8
1,200,131	-				-1.0
1,200,131	-				-1.2
1,200,131	-				+0.5
1,200,131	-				+0.3
1,200,131	-				-0.1
1,200,131	-				+0.5
1,200,131	-				-0.2
1,200,131	-				-0.2
1,200,131	-				-0.8
1,200,131	-				-0.8
1,200,131	-				-0.1
1,200,131	-				-0.2
1,200,131	-				-0.3
1,200,145	+				+1.4
1,200,145	+				-0.5
1,200,145	+				-0.5
1,200,145	+				+1.0
1,200,145	+				-0.0
1,200,145	+				+0.3
1,200,146	-				+0.8
1,200,146	-				-0.4
1,200,146	-				-1.2
1,200,176	+				-0.2
1,200,176	+				-0.7
1,200,176	+				-0.8
1,200,176	+				+0.6
1,200,177	-				-1.1
1,200,177	-				+0.8
1,200,275	+		LRK54_RS05555	0.21	+0.0
1,200,275	+		LRK54_RS05555	0.21	-0.0
1,200,275	+		LRK54_RS05555	0.21	-0.7
1,200,275	+		LRK54_RS05555	0.21	-0.7
1,200,275	+		LRK54_RS05555	0.21	-1.4
1,200,275	+		LRK54_RS05555	0.21	-0.0
1,200,275	+		LRK54_RS05555	0.21	-0.3
1,200,275	+		LRK54_RS05555	0.21	-0.1
1,200,275	+		LRK54_RS05555	0.21	-0.8
1,200,275	+		LRK54_RS05555	0.21	-0.1
1,200,275	+		LRK54_RS05555	0.21	-0.2
1,200,275	+		LRK54_RS05555	0.21	-0.2
1,200,275	+		LRK54_RS05555	0.21	+0.2
1,200,275	+		LRK54_RS05555	0.21	-2.2
1,200,275	+		LRK54_RS05555	0.21	-1.0
1,200,275	+		LRK54_RS05555	0.21	-0.1
1,200,275	+		LRK54_RS05555	0.21	-0.2
1,200,276	-		LRK54_RS05555	0.21	-0.0
1,200,276	-		LRK54_RS05555	0.21	+1.0
1,200,276	-		LRK54_RS05555	0.21	-0.7
1,200,276	-		LRK54_RS05555	0.21	-0.1
1,200,276	-		LRK54_RS05555	0.21	-1.6
1,200,276	-		LRK54_RS05555	0.21	+0.0
1,200,276	-		LRK54_RS05555	0.21	-0.4
1,200,276	-		LRK54_RS05555	0.21	-0.4
1,200,276	-		LRK54_RS05555	0.21	-0.8
1,200,276	-		LRK54_RS05555	0.21	-1.2
1,200,276	-		LRK54_RS05555	0.21	+0.8
1,200,276	-		LRK54_RS05555	0.21	+2.8
1,200,276	-		LRK54_RS05555	0.21	-0.5
1,200,276	-		LRK54_RS05555	0.21	-0.2
1,200,362	+		LRK54_RS05555	0.32	-0.5
1,200,362	+		LRK54_RS05555	0.32	-0.4
1,200,362	+		LRK54_RS05555	0.32	+0.4
1,200,362	+		LRK54_RS05555	0.32	-1.0
1,200,362	+		LRK54_RS05555	0.32	-0.3
1,200,362	+		LRK54_RS05555	0.32	-0.4
1,200,362	+		LRK54_RS05555	0.32	-0.9
1,200,362	+		LRK54_RS05555	0.32	+0.3
1,200,363	-		LRK54_RS05555	0.32	+1.8
1,200,363	-		LRK54_RS05555	0.32	-0.7
1,200,363	-		LRK54_RS05555	0.32	-1.0
1,200,363	-		LRK54_RS05555	0.32	+0.4
1,200,363	-		LRK54_RS05555	0.32	-0.3
1,200,394	+		LRK54_RS05555	0.37	-0.4
1,200,395	-		LRK54_RS05555	0.37	-1.0
1,200,395	-		LRK54_RS05555	0.37	-2.0
1,200,395	-		LRK54_RS05555	0.37	-0.4
1,200,400	+		LRK54_RS05555	0.37	-0.1
1,200,400	+		LRK54_RS05555	0.37	+0.2
1,200,400	+		LRK54_RS05555	0.37	-0.2
1,200,400	+		LRK54_RS05555	0.37	-0.4
1,200,400	+		LRK54_RS05555	0.37	+0.6
1,200,401	-		LRK54_RS05555	0.37	-0.2
1,200,401	-		LRK54_RS05555	0.37	+0.1
1,200,401	-		LRK54_RS05555	0.37	-0.3
1,200,427	+		LRK54_RS05555	0.41	-0.2
1,200,427	+		LRK54_RS05555	0.41	+0.1
1,200,427	+		LRK54_RS05555	0.41	-0.7
1,200,427	+		LRK54_RS05555	0.41	+0.2
1,200,427	+		LRK54_RS05555	0.41	+1.4
1,200,428	-		LRK54_RS05555	0.41	-0.1
1,200,428	-		LRK54_RS05555	0.41	+1.0
1,200,428	-		LRK54_RS05555	0.41	-1.3
1,200,428	-		LRK54_RS05555	0.41	-0.1
1,200,428	-		LRK54_RS05555	0.41	-1.1
1,200,428	-		LRK54_RS05555	0.41	+1.8
1,200,428	-		LRK54_RS05555	0.41	+0.0
1,200,463	+		LRK54_RS05555	0.46	-0.1
1,200,463	+		LRK54_RS05555	0.46	-1.0
1,200,463	+		LRK54_RS05555	0.46	+0.6
1,200,463	+		LRK54_RS05555	0.46	+0.2
1,200,463	+		LRK54_RS05555	0.46	+1.4
1,200,463	+		LRK54_RS05555	0.46	-0.4
1,200,463	+		LRK54_RS05555	0.46	-0.4
1,200,463	+		LRK54_RS05555	0.46	+0.7
1,200,463	+		LRK54_RS05555	0.46	-0.5
1,200,463	+		LRK54_RS05555	0.46	+0.1
1,200,463	+		LRK54_RS05555	0.46	-0.9
1,200,463	+		LRK54_RS05555	0.46	-1.3
1,200,463	+		LRK54_RS05555	0.46	-0.4
1,200,463	+		LRK54_RS05555	0.46	-2.3
1,200,463	+		LRK54_RS05555	0.46	+0.9
1,200,463	+		LRK54_RS05555	0.46	-1.3
1,200,464	-		LRK54_RS05555	0.46	-0.4
1,200,464	-		LRK54_RS05555	0.46	+0.6
1,200,464	-		LRK54_RS05555	0.46	+0.8
1,200,464	-		LRK54_RS05555	0.46	+1.2
1,200,464	-		LRK54_RS05555	0.46	-2.2
1,200,464	-		LRK54_RS05555	0.46	+0.2
1,200,464	-		LRK54_RS05555	0.46	-0.1
1,200,514	+		LRK54_RS05555	0.52	-0.4
1,200,514	+		LRK54_RS05555	0.52	+0.4
1,200,514	+		LRK54_RS05555	0.52	+0.5
1,200,514	+		LRK54_RS05555	0.52	-1.7
1,200,514	+		LRK54_RS05555	0.52	-0.2
1,200,514	+		LRK54_RS05555	0.52	+0.6
1,200,515	-		LRK54_RS05555	0.53	+0.0
1,200,515	-		LRK54_RS05555	0.53	+0.4
1,200,515	-		LRK54_RS05555	0.53	-1.9
1,200,515	-		LRK54_RS05555	0.53	-1.3
1,200,515	-		LRK54_RS05555	0.53	+0.3
1,200,515	-		LRK54_RS05555	0.53	-0.2
1,200,515	-		LRK54_RS05555	0.53	-1.3
1,200,515	-		LRK54_RS05555	0.53	-0.1
1,200,515	-		LRK54_RS05555	0.53	-0.1
1,200,679	+		LRK54_RS05555	0.74	-0.7
1,200,679	+		LRK54_RS05555	0.74	-0.9
1,200,679	+		LRK54_RS05555	0.74	-0.7
1,200,679	+		LRK54_RS05555	0.74	+0.2
1,200,679	+		LRK54_RS05555	0.74	-0.7
1,200,680	-		LRK54_RS05555	0.74	-0.6
1,200,680	-		LRK54_RS05555	0.74	-1.3
1,200,680	-		LRK54_RS05555	0.74	-0.3
1,200,773	+		LRK54_RS05555	0.87	-1.0
1,200,773	+		LRK54_RS05555	0.87	-0.5
1,200,773	+		LRK54_RS05555	0.87	+3.4
1,200,773	+		LRK54_RS05555	0.87	-1.1
1,200,773	+		LRK54_RS05555	0.87	-0.8
1,200,773	+		LRK54_RS05555	0.87	+1.0
1,200,773	+		LRK54_RS05555	0.87	-0.3
1,200,773	+		LRK54_RS05555	0.87	+0.0
1,200,773	+		LRK54_RS05555	0.87	-0.7
1,200,773	+		LRK54_RS05555	0.87	-0.0
1,200,773	+		LRK54_RS05555	0.87	-0.0
1,200,774	-		LRK54_RS05555	0.87	+1.6
1,200,774	-		LRK54_RS05555	0.87	-0.1
1,200,774	-		LRK54_RS05555	0.87	-0.5
1,200,774	-		LRK54_RS05555	0.87	-0.1
1,200,774	-		LRK54_RS05555	0.87	+0.2
1,200,774	-		LRK54_RS05555	0.87	+0.9
1,200,774	-		LRK54_RS05555	0.87	+0.2
1,200,774	-		LRK54_RS05555	0.87	+1.4
1,200,774	-		LRK54_RS05555	0.87	-0.3
1,200,774	-		LRK54_RS05555	0.87	+0.3
1,200,774	-		LRK54_RS05555	0.87	+0.2
1,200,774	-		LRK54_RS05555	0.87	+1.4
1,200,774	-		LRK54_RS05555	0.87	+0.4
1,200,841	+				-1.2
1,200,841	+				-1.7
1,200,841	+				-0.3
1,200,841	+				-0.3
1,200,841	+				-0.4
1,200,841	+				+0.4
1,200,841	+				+0.1
1,200,841	+				+0.6
1,200,841	+				-0.7
1,200,841	+				-1.2
1,200,842	-				+0.2
1,200,842	-				-0.5
1,200,860	+				-0.2
1,200,860	+				-1.0
1,200,860	+				-0.0
1,200,860	+				+0.4
1,200,860	+				+1.8
1,200,860	+				-0.8
1,200,860	+				+0.3
1,200,861	-				+0.1
1,200,861	-				-1.4
1,200,861	-				+0.1
1,200,861	-				+0.5
1,200,861	-				+0.1
1,200,861	-				-0.2
1,200,861	-				+0.6
1,200,861	-				-0.4
1,200,861	-				-0.4
1,200,895	+				+0.6
1,200,895	+				-1.9
1,200,895	+				-1.1
1,200,896	-				+0.6
1,200,896	-				+0.1
1,200,896	-				+1.4
1,200,896	-				+0.9
1,200,945	+				-1.3
1,200,946	-				-0.7