Experiment: R2A with arsenate 15.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS04625 and LRK54_RS04630 are separated by 189 nucleotides LRK54_RS04630 and LRK54_RS04635 are separated by 103 nucleotides LRK54_RS04635 and LRK54_RS04640 are separated by 24 nucleotides
LRK54_RS04625: LRK54_RS04625 - serine hydroxymethyltransferase, at 983,665 to 984,918
_RS04625
LRK54_RS04630: LRK54_RS04630 - energy-dependent translational throttle protein EttA, at 985,108 to 986,775
_RS04630
LRK54_RS04635: LRK54_RS04635 - orotidine-5'-phosphate decarboxylase, at 986,879 to 987,697
_RS04635
LRK54_RS04640: LRK54_RS04640 - hypothetical protein, at 987,722 to 987,979
_RS04640
Position (kb) 985
986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 984.281 kb on + strand, within LRK54_RS04625 at 984.282 kb on - strand, within LRK54_RS04625 at 984.282 kb on - strand, within LRK54_RS04625 at 984.389 kb on + strand, within LRK54_RS04625 at 984.390 kb on - strand, within LRK54_RS04625 at 984.390 kb on - strand, within LRK54_RS04625 at 984.390 kb on - strand, within LRK54_RS04625 at 984.390 kb on - strand, within LRK54_RS04625 at 984.390 kb on - strand, within LRK54_RS04625 at 984.456 kb on + strand, within LRK54_RS04625 at 984.456 kb on - strand, within LRK54_RS04625 at 984.456 kb on - strand, within LRK54_RS04625 at 984.485 kb on + strand, within LRK54_RS04625 at 984.485 kb on + strand, within LRK54_RS04625 at 984.485 kb on + strand, within LRK54_RS04625 at 984.485 kb on + strand, within LRK54_RS04625 at 984.486 kb on - strand, within LRK54_RS04625 at 984.486 kb on - strand, within LRK54_RS04625 at 984.486 kb on - strand, within LRK54_RS04625 at 984.486 kb on - strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.602 kb on + strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.603 kb on - strand, within LRK54_RS04625 at 984.650 kb on + strand, within LRK54_RS04625 at 984.650 kb on + strand, within LRK54_RS04625 at 984.650 kb on + strand, within LRK54_RS04625 at 984.650 kb on + strand, within LRK54_RS04625 at 984.651 kb on - strand, within LRK54_RS04625 at 984.651 kb on - strand, within LRK54_RS04625 at 984.651 kb on - strand, within LRK54_RS04625 at 984.710 kb on + strand, within LRK54_RS04625 at 984.710 kb on + strand, within LRK54_RS04625 at 984.710 kb on + strand, within LRK54_RS04625 at 984.710 kb on + strand, within LRK54_RS04625 at 984.710 kb on + strand, within LRK54_RS04625 at 984.710 kb on + strand, within LRK54_RS04625 at 984.711 kb on - strand, within LRK54_RS04625 at 984.711 kb on - strand, within LRK54_RS04625 at 984.711 kb on - strand, within LRK54_RS04625 at 984.711 kb on - strand, within LRK54_RS04625 at 984.725 kb on + strand, within LRK54_RS04625 at 984.725 kb on + strand, within LRK54_RS04625 at 984.725 kb on + strand, within LRK54_RS04625 at 984.726 kb on - strand, within LRK54_RS04625 at 984.726 kb on - strand, within LRK54_RS04625 at 984.726 kb on - strand, within LRK54_RS04625 at 984.726 kb on - strand, within LRK54_RS04625 at 984.728 kb on + strand, within LRK54_RS04625 at 984.728 kb on + strand, within LRK54_RS04625 at 984.729 kb on - strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.755 kb on + strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.756 kb on - strand, within LRK54_RS04625 at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.806 kb on + strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.807 kb on - strand at 984.887 kb on + strand at 984.960 kb on + strand at 984.960 kb on + strand at 984.960 kb on + strand at 984.961 kb on - strand at 985.033 kb on + strand at 985.033 kb on + strand at 985.033 kb on + strand at 985.033 kb on + strand at 985.033 kb on + strand at 985.033 kb on + strand at 985.034 kb on - strand at 985.034 kb on - strand at 985.034 kb on - strand at 985.034 kb on - strand at 985.034 kb on - strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.035 kb on + strand at 985.120 kb on + strand at 985.120 kb on + strand at 985.120 kb on + strand at 985.120 kb on + strand at 985.126 kb on + strand at 985.126 kb on + strand at 985.126 kb on + strand at 985.126 kb on + strand at 985.344 kb on + strand, within LRK54_RS04630 at 985.840 kb on + strand, within LRK54_RS04630 at 985.840 kb on + strand, within LRK54_RS04630 at 986.278 kb on + strand, within LRK54_RS04630 at 986.278 kb on + strand, within LRK54_RS04630 at 986.389 kb on + strand, within LRK54_RS04630 at 986.389 kb on + strand, within LRK54_RS04630 at 986.389 kb on + strand, within LRK54_RS04630 at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.689 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 986.758 kb on + strand at 987.775 kb on + strand, within LRK54_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with arsenate 15.625 mM remove 984,281 + LRK54_RS04625 0.49 +2.0 984,282 - LRK54_RS04625 0.49 -1.3 984,282 - LRK54_RS04625 0.49 -0.9 984,389 + LRK54_RS04625 0.58 +0.1 984,390 - LRK54_RS04625 0.58 -0.6 984,390 - LRK54_RS04625 0.58 -1.9 984,390 - LRK54_RS04625 0.58 -0.8 984,390 - LRK54_RS04625 0.58 -1.1 984,390 - LRK54_RS04625 0.58 +1.1 984,456 + LRK54_RS04625 0.63 -1.6 984,456 - LRK54_RS04625 0.63 -0.8 984,456 - LRK54_RS04625 0.63 -1.6 984,485 + LRK54_RS04625 0.65 +0.4 984,485 + LRK54_RS04625 0.65 -1.5 984,485 + LRK54_RS04625 0.65 -1.4 984,485 + LRK54_RS04625 0.65 +0.1 984,486 - LRK54_RS04625 0.65 -1.4 984,486 - LRK54_RS04625 0.65 +0.8 984,486 - LRK54_RS04625 0.65 -0.6 984,486 - LRK54_RS04625 0.65 -0.7 984,602 + LRK54_RS04625 0.75 -1.4 984,602 + LRK54_RS04625 0.75 -1.1 984,602 + LRK54_RS04625 0.75 +0.1 984,602 + LRK54_RS04625 0.75 -0.2 984,602 + LRK54_RS04625 0.75 -0.5 984,602 + LRK54_RS04625 0.75 -1.1 984,602 + LRK54_RS04625 0.75 -0.5 984,603 - LRK54_RS04625 0.75 +1.4 984,603 - LRK54_RS04625 0.75 +0.8 984,603 - LRK54_RS04625 0.75 -0.6 984,603 - LRK54_RS04625 0.75 -1.6 984,603 - LRK54_RS04625 0.75 -0.4 984,603 - LRK54_RS04625 0.75 -2.7 984,603 - LRK54_RS04625 0.75 -0.4 984,603 - LRK54_RS04625 0.75 -2.1 984,650 + LRK54_RS04625 0.79 -2.0 984,650 + LRK54_RS04625 0.79 +0.8 984,650 + LRK54_RS04625 0.79 +1.7 984,650 + LRK54_RS04625 0.79 -1.1 984,651 - LRK54_RS04625 0.79 -1.1 984,651 - LRK54_RS04625 0.79 -1.7 984,651 - LRK54_RS04625 0.79 +0.1 984,710 + LRK54_RS04625 0.83 -0.1 984,710 + LRK54_RS04625 0.83 +0.4 984,710 + LRK54_RS04625 0.83 -1.8 984,710 + LRK54_RS04625 0.83 -2.1 984,710 + LRK54_RS04625 0.83 -1.2 984,710 + LRK54_RS04625 0.83 -1.6 984,711 - LRK54_RS04625 0.83 -0.4 984,711 - LRK54_RS04625 0.83 -1.4 984,711 - LRK54_RS04625 0.83 -0.4 984,711 - LRK54_RS04625 0.83 -1.0 984,725 + LRK54_RS04625 0.85 -1.0 984,725 + LRK54_RS04625 0.85 -1.8 984,725 + LRK54_RS04625 0.85 -1.3 984,726 - LRK54_RS04625 0.85 -1.3 984,726 - LRK54_RS04625 0.85 -0.4 984,726 - LRK54_RS04625 0.85 +0.4 984,726 - LRK54_RS04625 0.85 +1.1 984,728 + LRK54_RS04625 0.85 -0.5 984,728 + LRK54_RS04625 0.85 -0.1 984,729 - LRK54_RS04625 0.85 +0.4 984,755 + LRK54_RS04625 0.87 +0.8 984,755 + LRK54_RS04625 0.87 -0.8 984,755 + LRK54_RS04625 0.87 -0.7 984,755 + LRK54_RS04625 0.87 -0.2 984,755 + LRK54_RS04625 0.87 -0.8 984,755 + LRK54_RS04625 0.87 +0.6 984,755 + LRK54_RS04625 0.87 +0.4 984,755 + LRK54_RS04625 0.87 -0.8 984,756 - LRK54_RS04625 0.87 -0.3 984,756 - LRK54_RS04625 0.87 -2.7 984,756 - LRK54_RS04625 0.87 -1.7 984,756 - LRK54_RS04625 0.87 -1.4 984,756 - LRK54_RS04625 0.87 -0.4 984,756 - LRK54_RS04625 0.87 +0.4 984,756 - LRK54_RS04625 0.87 -0.5 984,756 - LRK54_RS04625 0.87 -1.7 984,756 - LRK54_RS04625 0.87 -1.0 984,806 + -1.0 984,806 + +0.4 984,806 + -1.0 984,806 + +0.7 984,806 + -2.2 984,806 + -0.2 984,806 + -0.8 984,806 + -0.8 984,806 + +0.4 984,806 + -1.3 984,806 + -0.9 984,806 + -0.6 984,806 + +0.8 984,806 + +0.1 984,806 + +0.8 984,806 + +0.6 984,806 + -1.4 984,806 + -0.6 984,806 + +1.1 984,806 + +0.4 984,806 + -1.6 984,806 + -0.4 984,806 + +0.2 984,807 - -0.9 984,807 - -1.6 984,807 - -2.5 984,807 - +0.4 984,807 - -2.1 984,807 - -0.6 984,807 - +0.1 984,807 - -0.2 984,807 - -2.1 984,807 - -0.2 984,807 - -1.5 984,807 - -0.4 984,807 - +0.4 984,807 - -0.2 984,807 - -1.3 984,807 - -2.0 984,807 - -0.6 984,807 - -1.5 984,887 + -1.4 984,960 + -0.9 984,960 + -0.2 984,960 + -0.1 984,961 - +1.4 985,033 + +1.4 985,033 + -0.7 985,033 + -1.4 985,033 + +0.0 985,033 + +2.7 985,033 + +0.2 985,034 - -0.6 985,034 - -0.0 985,034 - +0.4 985,034 - -0.3 985,034 - +0.0 985,035 + -1.5 985,035 + +0.3 985,035 + +1.0 985,035 + -0.0 985,035 + -1.5 985,035 + +2.4 985,035 + -1.4 985,035 + +1.1 985,035 + +1.1 985,035 + +0.1 985,035 + -0.7 985,035 + -0.2 985,035 + -1.2 985,120 + -0.6 985,120 + -1.2 985,120 + +0.4 985,120 + -0.6 985,126 + -2.9 985,126 + -1.2 985,126 + -0.6 985,126 + +0.1 985,344 + LRK54_RS04630 0.14 +1.4 985,840 + LRK54_RS04630 0.44 +1.4 985,840 + LRK54_RS04630 0.44 -0.4 986,278 + LRK54_RS04630 0.70 +0.8 986,278 + LRK54_RS04630 0.70 +0.4 986,389 + LRK54_RS04630 0.77 -0.4 986,389 + LRK54_RS04630 0.77 +1.4 986,389 + LRK54_RS04630 0.77 +0.8 986,689 + +0.4 986,689 + -0.4 986,689 + -0.4 986,689 + +0.4 986,689 + +0.8 986,689 + -1.5 986,689 + +0.8 986,689 + -0.1 986,689 + -2.0 986,758 + +0.7 986,758 + -0.3 986,758 + -0.4 986,758 + +0.7 986,758 + +0.3 986,758 + +0.6 986,758 + -0.2 986,758 + -0.3 986,758 + -1.0 987,775 + LRK54_RS04640 0.21 +0.4
Or see this region's nucleotide sequence