Experiment: R2A with arsenate 15.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03700 and LRK54_RS03705 are separated by 52 nucleotides LRK54_RS03705 and LRK54_RS03710 overlap by 4 nucleotides LRK54_RS03710 and LRK54_RS03715 are separated by 153 nucleotides
LRK54_RS03700: LRK54_RS03700 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 783,510 to 784,892
_RS03700
LRK54_RS03705: LRK54_RS03705 - lipoprotein insertase outer membrane protein LolB, at 784,945 to 785,553
_RS03705
LRK54_RS03710: LRK54_RS03710 - tetratricopeptide repeat protein, at 785,550 to 787,238
_RS03710
LRK54_RS03715: LRK54_RS03715 - glutamyl-tRNA reductase, at 787,392 to 788,672
_RS03715
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 784.622 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.622 kb on - strand, within LRK54_RS03700 at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.786 kb on + strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.787 kb on - strand at 784.939 kb on - strand at 785.756 kb on - strand, within LRK54_RS03710 at 785.756 kb on - strand, within LRK54_RS03710 at 785.756 kb on - strand, within LRK54_RS03710 at 785.756 kb on - strand, within LRK54_RS03710 at 785.869 kb on + strand, within LRK54_RS03710 at 785.870 kb on - strand, within LRK54_RS03710 at 785.870 kb on - strand, within LRK54_RS03710 at 785.870 kb on - strand, within LRK54_RS03710 at 785.966 kb on - strand, within LRK54_RS03710 at 785.966 kb on - strand, within LRK54_RS03710 at 785.966 kb on - strand, within LRK54_RS03710 at 785.966 kb on - strand, within LRK54_RS03710 at 785.984 kb on - strand, within LRK54_RS03710 at 785.984 kb on - strand, within LRK54_RS03710 at 785.984 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.050 kb on - strand, within LRK54_RS03710 at 786.068 kb on - strand, within LRK54_RS03710 at 786.068 kb on - strand, within LRK54_RS03710 at 786.122 kb on - strand, within LRK54_RS03710 at 786.122 kb on - strand, within LRK54_RS03710 at 786.122 kb on - strand at 786.122 kb on - strand, within LRK54_RS03710 at 786.245 kb on - strand, within LRK54_RS03710 at 786.245 kb on - strand, within LRK54_RS03710 at 786.245 kb on - strand, within LRK54_RS03710 at 786.245 kb on - strand, within LRK54_RS03710 at 786.302 kb on - strand, within LRK54_RS03710 at 786.302 kb on - strand, within LRK54_RS03710 at 786.302 kb on - strand, within LRK54_RS03710 at 786.302 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.410 kb on - strand, within LRK54_RS03710 at 786.461 kb on - strand, within LRK54_RS03710 at 786.461 kb on - strand, within LRK54_RS03710 at 786.461 kb on - strand, within LRK54_RS03710 at 786.461 kb on - strand, within LRK54_RS03710 at 786.461 kb on - strand, within LRK54_RS03710 at 786.461 kb on - strand, within LRK54_RS03710 at 786.491 kb on - strand, within LRK54_RS03710 at 786.491 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.602 kb on - strand, within LRK54_RS03710 at 786.656 kb on - strand, within LRK54_RS03710 at 787.045 kb on + strand, within LRK54_RS03710 at 787.045 kb on + strand, within LRK54_RS03710 at 787.046 kb on - strand, within LRK54_RS03710 at 787.046 kb on - strand, within LRK54_RS03710 at 787.046 kb on - strand, within LRK54_RS03710 at 787.046 kb on - strand, within LRK54_RS03710 at 787.046 kb on - strand, within LRK54_RS03710 at 787.046 kb on - strand, within LRK54_RS03710 at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.239 kb on + strand at 787.240 kb on - strand at 787.240 kb on - strand at 787.240 kb on - strand at 787.240 kb on - strand at 787.240 kb on - strand at 787.248 kb on - strand at 787.248 kb on - strand at 787.293 kb on - strand at 787.293 kb on - strand at 787.293 kb on - strand at 787.293 kb on - strand at 787.293 kb on - strand at 787.293 kb on - strand at 787.347 kb on + strand at 787.347 kb on + strand at 787.347 kb on + strand at 787.347 kb on + strand at 787.348 kb on - strand at 787.348 kb on - strand at 787.348 kb on - strand at 787.352 kb on + strand at 787.352 kb on + strand at 787.352 kb on + strand at 787.352 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with arsenate 15.625 mM remove 784,622 - LRK54_RS03700 0.80 +0.9 784,622 - LRK54_RS03700 0.80 -0.9 784,622 - LRK54_RS03700 0.80 -0.2 784,622 - LRK54_RS03700 0.80 -0.6 784,786 + -2.8 784,786 + +0.5 784,786 + -0.1 784,786 + -0.0 784,786 + +0.3 784,786 + -2.3 784,786 + -0.8 784,786 + +3.0 784,787 - +0.5 784,787 - -0.1 784,787 - +1.1 784,787 - -0.6 784,787 - +0.6 784,787 - -0.5 784,787 - +0.2 784,787 - -1.0 784,787 - +0.1 784,787 - -0.5 784,787 - -1.0 784,939 - -0.1 785,756 - LRK54_RS03710 0.12 -0.5 785,756 - LRK54_RS03710 0.12 +0.3 785,756 - LRK54_RS03710 0.12 -0.9 785,756 - LRK54_RS03710 0.12 -1.9 785,869 + LRK54_RS03710 0.19 +0.9 785,870 - LRK54_RS03710 0.19 -3.2 785,870 - LRK54_RS03710 0.19 -1.8 785,870 - LRK54_RS03710 0.19 -1.4 785,966 - LRK54_RS03710 0.25 -0.3 785,966 - LRK54_RS03710 0.25 +0.9 785,966 - LRK54_RS03710 0.25 -1.5 785,966 - LRK54_RS03710 0.25 -0.8 785,984 - LRK54_RS03710 0.26 -1.5 785,984 - LRK54_RS03710 0.26 +0.5 785,984 - LRK54_RS03710 0.26 -3.4 786,050 - LRK54_RS03710 0.30 +0.9 786,050 - LRK54_RS03710 0.30 -0.9 786,050 - LRK54_RS03710 0.30 -1.4 786,050 - LRK54_RS03710 0.30 +3.2 786,050 - LRK54_RS03710 0.30 -1.9 786,050 - LRK54_RS03710 0.30 +0.1 786,050 - LRK54_RS03710 0.30 -0.1 786,050 - LRK54_RS03710 0.30 +1.8 786,068 - LRK54_RS03710 0.31 -1.8 786,068 - LRK54_RS03710 0.31 +0.1 786,122 - LRK54_RS03710 0.34 +0.1 786,122 - LRK54_RS03710 0.34 -0.4 786,122 - +1.5 786,122 - LRK54_RS03710 0.34 -0.2 786,245 - LRK54_RS03710 0.41 -0.7 786,245 - LRK54_RS03710 0.41 +0.5 786,245 - LRK54_RS03710 0.41 -0.5 786,245 - LRK54_RS03710 0.41 -0.4 786,302 - LRK54_RS03710 0.45 -0.0 786,302 - LRK54_RS03710 0.45 -0.9 786,302 - LRK54_RS03710 0.45 +0.1 786,302 - LRK54_RS03710 0.45 -1.6 786,410 - LRK54_RS03710 0.51 -0.1 786,410 - LRK54_RS03710 0.51 -0.1 786,410 - LRK54_RS03710 0.51 -2.5 786,410 - LRK54_RS03710 0.51 -0.1 786,410 - LRK54_RS03710 0.51 -0.1 786,410 - LRK54_RS03710 0.51 -1.2 786,410 - LRK54_RS03710 0.51 -1.5 786,410 - LRK54_RS03710 0.51 -0.7 786,410 - LRK54_RS03710 0.51 -1.5 786,410 - LRK54_RS03710 0.51 +1.3 786,461 - LRK54_RS03710 0.54 -1.5 786,461 - LRK54_RS03710 0.54 -1.0 786,461 - LRK54_RS03710 0.54 -1.2 786,461 - LRK54_RS03710 0.54 -1.5 786,461 - LRK54_RS03710 0.54 -1.5 786,461 - LRK54_RS03710 0.54 -1.2 786,491 - LRK54_RS03710 0.56 -1.0 786,491 - LRK54_RS03710 0.56 -2.1 786,602 - LRK54_RS03710 0.62 -1.2 786,602 - LRK54_RS03710 0.62 -1.5 786,602 - LRK54_RS03710 0.62 -0.5 786,602 - LRK54_RS03710 0.62 +1.0 786,602 - LRK54_RS03710 0.62 -0.5 786,602 - LRK54_RS03710 0.62 +0.3 786,602 - LRK54_RS03710 0.62 -0.1 786,602 - LRK54_RS03710 0.62 -0.7 786,602 - LRK54_RS03710 0.62 -0.2 786,602 - LRK54_RS03710 0.62 -1.2 786,656 - LRK54_RS03710 0.65 -1.0 787,045 + LRK54_RS03710 0.89 +0.1 787,045 + LRK54_RS03710 0.89 -0.5 787,046 - LRK54_RS03710 0.89 -1.4 787,046 - LRK54_RS03710 0.89 -1.5 787,046 - LRK54_RS03710 0.89 -1.6 787,046 - LRK54_RS03710 0.89 -0.5 787,046 - LRK54_RS03710 0.89 -1.1 787,046 - LRK54_RS03710 0.89 -1.2 787,239 + -1.1 787,239 + -0.5 787,239 + +1.5 787,239 + -0.0 787,239 + -0.9 787,239 + -1.4 787,239 + +0.1 787,239 + +0.6 787,239 + +0.9 787,240 - -0.0 787,240 - -1.1 787,240 - -0.4 787,240 - +0.2 787,240 - +0.7 787,248 - -1.6 787,248 - -1.2 787,293 - -0.4 787,293 - -0.7 787,293 - +0.5 787,293 - -0.4 787,293 - -0.7 787,293 - -0.2 787,347 + -2.1 787,347 + +0.1 787,347 + -0.7 787,347 + -0.9 787,348 - -0.9 787,348 - -0.4 787,348 - -0.4 787,352 + +1.7 787,352 + -0.1 787,352 + -0.9 787,352 + -0.6
Or see this region's nucleotide sequence