Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS01400

Experiment: R2A with arsenate 15.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS01390 and LRK54_RS01395 overlap by 4 nucleotidesLRK54_RS01395 and LRK54_RS01400 are separated by 111 nucleotidesLRK54_RS01400 and LRK54_RS01405 are separated by 107 nucleotidesLRK54_RS01405 and LRK54_RS01410 are separated by 44 nucleotides LRK54_RS01390: LRK54_RS01390 - ACR3 family arsenite efflux transporter, at 301,956 to 303,041 _RS01390 LRK54_RS01395: LRK54_RS01395 - arsenate reductase ArsC, at 303,038 to 303,544 _RS01395 LRK54_RS01400: LRK54_RS01400 - arsenical resistance protein ArsH, at 303,656 to 304,387 _RS01400 LRK54_RS01405: LRK54_RS01405 - YdeI/OmpD-associated family protein, at 304,495 to 305,076 _RS01405 LRK54_RS01410: LRK54_RS01410 - ABC transporter ATP-binding protein/permease, at 305,121 to 306,965 _RS01410 Position (kb) 303 304 305Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.810 kb on + strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.811 kb on - strand, within LRK54_RS01390at 302.949 kb on + strandat 303.148 kb on - strand, within LRK54_RS01395at 303.148 kb on - strand, within LRK54_RS01395at 303.402 kb on + strand, within LRK54_RS01395at 303.585 kb on - strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.643 kb on + strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.644 kb on - strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.645 kb on + strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.646 kb on - strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.655 kb on + strandat 303.656 kb on - strandat 303.656 kb on - strandat 303.656 kb on - strandat 303.656 kb on - strandat 303.731 kb on + strand, within LRK54_RS01400at 303.731 kb on + strand, within LRK54_RS01400at 303.732 kb on - strand, within LRK54_RS01400at 303.732 kb on - strand, within LRK54_RS01400at 303.732 kb on - strand, within LRK54_RS01400at 304.190 kb on + strand, within LRK54_RS01400at 304.190 kb on + strand, within LRK54_RS01400at 304.191 kb on - strand, within LRK54_RS01400at 304.191 kb on - strand, within LRK54_RS01400at 304.191 kb on - strand, within LRK54_RS01400at 304.259 kb on + strand, within LRK54_RS01400at 304.259 kb on + strand, within LRK54_RS01400at 304.260 kb on - strand, within LRK54_RS01400at 304.274 kb on + strand, within LRK54_RS01400at 304.274 kb on + strand, within LRK54_RS01400at 304.420 kb on + strandat 304.496 kb on + strandat 304.496 kb on + strandat 304.497 kb on - strandat 304.497 kb on - strandat 304.565 kb on + strand, within LRK54_RS01405at 304.565 kb on + strand, within LRK54_RS01405at 304.565 kb on + strand, within LRK54_RS01405at 304.565 kb on + strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 304.566 kb on - strand, within LRK54_RS01405at 305.105 kb on + strandat 305.105 kb on + strandat 305.105 kb on + strandat 305.186 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with arsenate 15.625 mM
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302,810 + LRK54_RS01390 0.79 -3.4
302,810 + LRK54_RS01390 0.79 -4.5
302,810 + LRK54_RS01390 0.79 -2.1
302,810 + LRK54_RS01390 0.79 -1.4
302,810 + LRK54_RS01390 0.79 -3.0
302,810 + LRK54_RS01390 0.79 -2.3
302,810 + LRK54_RS01390 0.79 -2.1
302,810 + LRK54_RS01390 0.79 -3.1
302,810 + LRK54_RS01390 0.79 -2.7
302,810 + LRK54_RS01390 0.79 -2.8
302,810 + LRK54_RS01390 0.79 -3.0
302,810 + LRK54_RS01390 0.79 -4.6
302,810 + LRK54_RS01390 0.79 -3.0
302,810 + LRK54_RS01390 0.79 -3.7
302,811 - LRK54_RS01390 0.79 -2.9
302,811 - LRK54_RS01390 0.79 -1.6
302,811 - LRK54_RS01390 0.79 -1.0
302,811 - LRK54_RS01390 0.79 +1.6
302,811 - LRK54_RS01390 0.79 -2.5
302,811 - LRK54_RS01390 0.79 -0.3
302,811 - LRK54_RS01390 0.79 -2.5
302,811 - LRK54_RS01390 0.79 -3.4
302,811 - LRK54_RS01390 0.79 -0.0
302,811 - LRK54_RS01390 0.79 -0.4
302,811 - LRK54_RS01390 0.79 +1.6
302,811 - LRK54_RS01390 0.79 -1.9
302,811 - LRK54_RS01390 0.79 -2.1
302,949 + -2.0
303,148 - LRK54_RS01395 0.22 -1.4
303,148 - LRK54_RS01395 0.22 -1.9
303,402 + LRK54_RS01395 0.72 -2.0
303,585 - -3.3
303,643 + -4.6
303,643 + -2.7
303,643 + -3.3
303,643 + -2.6
303,643 + -1.8
303,643 + -3.1
303,643 + -3.4
303,643 + -1.4
303,643 + -0.3
303,643 + -2.7
303,643 + -2.7
303,643 + -0.9
303,643 + -1.0
303,643 + -2.4
303,643 + -2.6
303,643 + -2.4
303,643 + -1.7
303,643 + -3.9
303,643 + -0.3
303,643 + -2.6
303,643 + -0.6
303,644 - -2.7
303,644 - -1.7
303,644 - -2.5
303,644 - -2.5
303,644 - -2.4
303,644 - -1.5
303,644 - -2.0
303,644 - -0.6
303,644 - -1.4
303,644 - -0.8
303,644 - -1.6
303,644 - -2.6
303,644 - -0.3
303,644 - -0.9
303,644 - -3.5
303,644 - +0.7
303,644 - -3.3
303,644 - -0.3
303,644 - -0.9
303,644 - -2.1
303,644 - -1.5
303,644 - -0.6
303,644 - -2.1
303,645 + +2.6
303,645 + -2.0
303,645 + -0.4
303,645 + -3.1
303,645 + -2.7
303,646 - -1.6
303,646 - -1.2
303,646 - -2.0
303,646 - -3.0
303,646 - -1.3
303,646 - -1.7
303,655 + -3.4
303,655 + -3.7
303,655 + -1.6
303,655 + -1.4
303,655 + -1.4
303,656 - -0.3
303,656 - -2.1
303,656 - -1.8
303,656 - -2.1
303,731 + LRK54_RS01400 0.10 -2.6
303,731 + LRK54_RS01400 0.10 -3.0
303,732 - LRK54_RS01400 0.10 -1.8
303,732 - LRK54_RS01400 0.10 +0.6
303,732 - LRK54_RS01400 0.10 -1.6
304,190 + LRK54_RS01400 0.73 -0.3
304,190 + LRK54_RS01400 0.73 -2.2
304,191 - LRK54_RS01400 0.73 -2.7
304,191 - LRK54_RS01400 0.73 -0.4
304,191 - LRK54_RS01400 0.73 -0.9
304,259 + LRK54_RS01400 0.82 -1.9
304,259 + LRK54_RS01400 0.82 -0.7
304,260 - LRK54_RS01400 0.83 -1.8
304,274 + LRK54_RS01400 0.84 -2.3
304,274 + LRK54_RS01400 0.84 -1.0
304,420 + -1.4
304,496 + -1.5
304,496 + +1.6
304,497 - -0.2
304,497 - -0.9
304,565 + LRK54_RS01405 0.12 -0.2
304,565 + LRK54_RS01405 0.12 -1.5
304,565 + LRK54_RS01405 0.12 -1.0
304,565 + LRK54_RS01405 0.12 -0.4
304,566 - LRK54_RS01405 0.12 +1.5
304,566 - LRK54_RS01405 0.12 -0.3
304,566 - LRK54_RS01405 0.12 +0.6
304,566 - LRK54_RS01405 0.12 -0.5
304,566 - LRK54_RS01405 0.12 +0.1
304,566 - LRK54_RS01405 0.12 -0.9
304,566 - LRK54_RS01405 0.12 +0.2
305,105 + +1.0
305,105 + -0.6
305,105 + +1.0
305,186 - -1.8

Or see this region's nucleotide sequence