Experiment: R2A with Lomefloxacin 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24175 and CA265_RS24180 are separated by 174 nucleotides CA265_RS24180 and CA265_RS24185 are separated by 105 nucleotides
CA265_RS24175: CA265_RS24175 - hypothetical protein, at 5,888,639 to 5,889,442
_RS24175
CA265_RS24180: CA265_RS24180 - acriflavin resistance protein, at 5,889,617 to 5,892,811
_RS24180
CA265_RS24185: CA265_RS24185 - efflux transporter periplasmic adaptor subunit, at 5,892,917 to 5,893,984
_RS24185
Position (kb) 5889
5890
5891
5892
5893 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5888.630 kb on - strand at 5888.635 kb on + strand at 5888.636 kb on - strand at 5888.636 kb on - strand at 5888.636 kb on - strand at 5888.640 kb on + strand at 5888.700 kb on - strand at 5888.740 kb on + strand, within CA265_RS24175 at 5888.740 kb on + strand, within CA265_RS24175 at 5888.742 kb on + strand, within CA265_RS24175 at 5888.742 kb on + strand, within CA265_RS24175 at 5888.743 kb on - strand, within CA265_RS24175 at 5888.767 kb on - strand, within CA265_RS24175 at 5888.820 kb on - strand, within CA265_RS24175 at 5888.866 kb on - strand, within CA265_RS24175 at 5888.898 kb on - strand, within CA265_RS24175 at 5888.899 kb on + strand, within CA265_RS24175 at 5888.943 kb on + strand, within CA265_RS24175 at 5889.117 kb on + strand, within CA265_RS24175 at 5889.136 kb on + strand, within CA265_RS24175 at 5889.154 kb on + strand, within CA265_RS24175 at 5889.155 kb on - strand, within CA265_RS24175 at 5889.156 kb on + strand, within CA265_RS24175 at 5889.186 kb on + strand, within CA265_RS24175 at 5889.250 kb on + strand, within CA265_RS24175 at 5889.281 kb on - strand, within CA265_RS24175 at 5889.297 kb on + strand, within CA265_RS24175 at 5889.297 kb on + strand, within CA265_RS24175 at 5889.316 kb on + strand, within CA265_RS24175 at 5889.317 kb on - strand, within CA265_RS24175 at 5889.317 kb on - strand, within CA265_RS24175 at 5889.353 kb on + strand, within CA265_RS24175 at 5889.454 kb on + strand at 5889.455 kb on - strand at 5889.455 kb on - strand at 5889.455 kb on - strand at 5889.494 kb on + strand at 5889.603 kb on - strand at 5889.663 kb on + strand at 5889.664 kb on - strand at 5889.730 kb on + strand at 5889.741 kb on - strand at 5889.741 kb on - strand at 5889.745 kb on - strand at 5889.765 kb on - strand at 5889.872 kb on + strand at 5889.894 kb on - strand at 5889.963 kb on - strand, within CA265_RS24180 at 5890.097 kb on + strand, within CA265_RS24180 at 5890.132 kb on + strand, within CA265_RS24180 at 5890.133 kb on - strand, within CA265_RS24180 at 5890.172 kb on + strand, within CA265_RS24180 at 5890.187 kb on + strand, within CA265_RS24180 at 5890.187 kb on + strand, within CA265_RS24180 at 5890.188 kb on - strand, within CA265_RS24180 at 5890.195 kb on + strand, within CA265_RS24180 at 5890.199 kb on + strand, within CA265_RS24180 at 5890.204 kb on + strand, within CA265_RS24180 at 5890.249 kb on - strand, within CA265_RS24180 at 5890.298 kb on + strand, within CA265_RS24180 at 5890.378 kb on + strand, within CA265_RS24180 at 5890.441 kb on + strand, within CA265_RS24180 at 5890.450 kb on + strand, within CA265_RS24180 at 5890.529 kb on - strand, within CA265_RS24180 at 5890.539 kb on + strand, within CA265_RS24180 at 5890.540 kb on - strand, within CA265_RS24180 at 5890.558 kb on + strand, within CA265_RS24180 at 5890.559 kb on - strand, within CA265_RS24180 at 5890.690 kb on + strand, within CA265_RS24180 at 5890.691 kb on - strand, within CA265_RS24180 at 5890.691 kb on - strand, within CA265_RS24180 at 5890.756 kb on + strand, within CA265_RS24180 at 5890.775 kb on + strand, within CA265_RS24180 at 5890.954 kb on - strand, within CA265_RS24180 at 5890.961 kb on - strand, within CA265_RS24180 at 5891.003 kb on - strand, within CA265_RS24180 at 5891.005 kb on + strand, within CA265_RS24180 at 5891.033 kb on - strand, within CA265_RS24180 at 5891.037 kb on - strand, within CA265_RS24180 at 5891.125 kb on + strand, within CA265_RS24180 at 5891.169 kb on - strand, within CA265_RS24180 at 5891.169 kb on - strand, within CA265_RS24180 at 5891.171 kb on + strand, within CA265_RS24180 at 5891.206 kb on + strand, within CA265_RS24180 at 5891.206 kb on + strand, within CA265_RS24180 at 5891.210 kb on + strand, within CA265_RS24180 at 5891.211 kb on - strand, within CA265_RS24180 at 5891.243 kb on + strand, within CA265_RS24180 at 5891.244 kb on - strand, within CA265_RS24180 at 5891.329 kb on + strand, within CA265_RS24180 at 5891.366 kb on + strand, within CA265_RS24180 at 5891.367 kb on - strand, within CA265_RS24180 at 5891.388 kb on - strand, within CA265_RS24180 at 5891.405 kb on + strand, within CA265_RS24180 at 5891.406 kb on - strand, within CA265_RS24180 at 5891.407 kb on + strand, within CA265_RS24180 at 5891.407 kb on + strand, within CA265_RS24180 at 5891.407 kb on + strand, within CA265_RS24180 at 5891.407 kb on + strand, within CA265_RS24180 at 5891.408 kb on - strand, within CA265_RS24180 at 5891.408 kb on - strand, within CA265_RS24180 at 5891.412 kb on - strand, within CA265_RS24180 at 5891.456 kb on - strand, within CA265_RS24180 at 5891.490 kb on - strand, within CA265_RS24180 at 5891.504 kb on + strand, within CA265_RS24180 at 5891.513 kb on - strand, within CA265_RS24180 at 5891.620 kb on + strand, within CA265_RS24180 at 5891.624 kb on + strand, within CA265_RS24180 at 5891.624 kb on + strand, within CA265_RS24180 at 5891.654 kb on + strand, within CA265_RS24180 at 5891.666 kb on - strand, within CA265_RS24180 at 5891.676 kb on - strand, within CA265_RS24180 at 5891.695 kb on + strand, within CA265_RS24180 at 5891.726 kb on + strand, within CA265_RS24180 at 5891.829 kb on - strand, within CA265_RS24180 at 5891.829 kb on - strand, within CA265_RS24180 at 5891.872 kb on + strand, within CA265_RS24180 at 5891.915 kb on + strand, within CA265_RS24180 at 5891.916 kb on - strand, within CA265_RS24180 at 5891.916 kb on - strand, within CA265_RS24180 at 5891.916 kb on - strand, within CA265_RS24180 at 5891.916 kb on - strand, within CA265_RS24180 at 5891.916 kb on - strand, within CA265_RS24180 at 5891.974 kb on + strand, within CA265_RS24180 at 5891.974 kb on + strand, within CA265_RS24180 at 5891.992 kb on + strand, within CA265_RS24180 at 5892.047 kb on + strand, within CA265_RS24180 at 5892.047 kb on + strand, within CA265_RS24180 at 5892.047 kb on + strand, within CA265_RS24180 at 5892.115 kb on - strand, within CA265_RS24180 at 5892.138 kb on - strand, within CA265_RS24180 at 5892.138 kb on - strand, within CA265_RS24180 at 5892.138 kb on - strand, within CA265_RS24180 at 5892.157 kb on + strand, within CA265_RS24180 at 5892.180 kb on - strand, within CA265_RS24180 at 5892.185 kb on - strand, within CA265_RS24180 at 5892.227 kb on - strand, within CA265_RS24180 at 5892.252 kb on - strand, within CA265_RS24180 at 5892.365 kb on - strand, within CA265_RS24180 at 5892.365 kb on - strand, within CA265_RS24180 at 5892.394 kb on + strand, within CA265_RS24180 at 5892.395 kb on - strand, within CA265_RS24180 at 5892.395 kb on - strand, within CA265_RS24180 at 5892.476 kb on + strand, within CA265_RS24180 at 5892.506 kb on - strand at 5892.539 kb on - strand at 5892.545 kb on - strand at 5892.548 kb on + strand at 5892.549 kb on - strand at 5892.673 kb on + strand at 5892.677 kb on + strand at 5892.680 kb on + strand at 5892.680 kb on + strand at 5892.681 kb on - strand at 5892.726 kb on + strand at 5892.731 kb on + strand at 5892.732 kb on - strand at 5892.732 kb on - strand at 5892.789 kb on - strand at 5892.795 kb on - strand at 5892.795 kb on - strand at 5892.804 kb on - strand at 5892.818 kb on + strand at 5892.819 kb on - strand at 5892.840 kb on - strand at 5892.923 kb on + strand at 5892.928 kb on + strand at 5892.975 kb on - strand at 5893.022 kb on + strand at 5893.060 kb on + strand, within CA265_RS24185 at 5893.060 kb on + strand, within CA265_RS24185 at 5893.061 kb on - strand, within CA265_RS24185 at 5893.061 kb on - strand, within CA265_RS24185 at 5893.061 kb on - strand, within CA265_RS24185 at 5893.067 kb on - strand, within CA265_RS24185 at 5893.120 kb on + strand, within CA265_RS24185 at 5893.121 kb on - strand, within CA265_RS24185 at 5893.160 kb on - strand, within CA265_RS24185 at 5893.176 kb on + strand, within CA265_RS24185 at 5893.177 kb on - strand, within CA265_RS24185 at 5893.289 kb on - strand, within CA265_RS24185 at 5893.406 kb on + strand, within CA265_RS24185 at 5893.474 kb on + strand, within CA265_RS24185 at 5893.486 kb on + strand, within CA265_RS24185 at 5893.490 kb on - strand, within CA265_RS24185 at 5893.552 kb on + strand, within CA265_RS24185 at 5893.623 kb on - strand, within CA265_RS24185 at 5893.636 kb on - strand, within CA265_RS24185 at 5893.731 kb on + strand, within CA265_RS24185 at 5893.731 kb on + strand, within CA265_RS24185 at 5893.732 kb on - strand, within CA265_RS24185 at 5893.764 kb on - strand, within CA265_RS24185 at 5893.771 kb on + strand, within CA265_RS24185 at 5893.772 kb on - strand, within CA265_RS24185
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.1 mM remove 5,888,630 - -1.4 5,888,635 + -0.3 5,888,636 - +0.6 5,888,636 - -0.4 5,888,636 - -0.1 5,888,640 + -0.4 5,888,700 - -0.6 5,888,740 + CA265_RS24175 0.13 -0.7 5,888,740 + CA265_RS24175 0.13 -1.0 5,888,742 + CA265_RS24175 0.13 +0.1 5,888,742 + CA265_RS24175 0.13 -0.7 5,888,743 - CA265_RS24175 0.13 -1.1 5,888,767 - CA265_RS24175 0.16 -0.5 5,888,820 - CA265_RS24175 0.23 -0.6 5,888,866 - CA265_RS24175 0.28 -0.2 5,888,898 - CA265_RS24175 0.32 +0.9 5,888,899 + CA265_RS24175 0.32 -1.0 5,888,943 + CA265_RS24175 0.38 -1.1 5,889,117 + CA265_RS24175 0.59 -0.1 5,889,136 + CA265_RS24175 0.62 -0.6 5,889,154 + CA265_RS24175 0.64 -1.0 5,889,155 - CA265_RS24175 0.64 -1.3 5,889,156 + CA265_RS24175 0.64 -1.7 5,889,186 + CA265_RS24175 0.68 -0.8 5,889,250 + CA265_RS24175 0.76 -0.8 5,889,281 - CA265_RS24175 0.80 -0.5 5,889,297 + CA265_RS24175 0.82 +0.1 5,889,297 + CA265_RS24175 0.82 -0.9 5,889,316 + CA265_RS24175 0.84 -1.5 5,889,317 - CA265_RS24175 0.84 +0.0 5,889,317 - CA265_RS24175 0.84 -0.0 5,889,353 + CA265_RS24175 0.89 +0.5 5,889,454 + +0.1 5,889,455 - -0.8 5,889,455 - +0.1 5,889,455 - -1.0 5,889,494 + -0.4 5,889,603 - -0.4 5,889,663 + -0.3 5,889,664 - -0.1 5,889,730 + -0.6 5,889,741 - -1.0 5,889,741 - -1.3 5,889,745 - -0.7 5,889,765 - -0.9 5,889,872 + -0.0 5,889,894 - -0.4 5,889,963 - CA265_RS24180 0.11 -0.3 5,890,097 + CA265_RS24180 0.15 -0.8 5,890,132 + CA265_RS24180 0.16 -0.1 5,890,133 - CA265_RS24180 0.16 +0.7 5,890,172 + CA265_RS24180 0.17 -0.4 5,890,187 + CA265_RS24180 0.18 -1.3 5,890,187 + CA265_RS24180 0.18 -0.3 5,890,188 - CA265_RS24180 0.18 -0.2 5,890,195 + CA265_RS24180 0.18 -0.3 5,890,199 + CA265_RS24180 0.18 -0.4 5,890,204 + CA265_RS24180 0.18 -1.0 5,890,249 - CA265_RS24180 0.20 -0.1 5,890,298 + CA265_RS24180 0.21 -0.2 5,890,378 + CA265_RS24180 0.24 -0.5 5,890,441 + CA265_RS24180 0.26 -0.5 5,890,450 + CA265_RS24180 0.26 -0.6 5,890,529 - CA265_RS24180 0.29 -0.4 5,890,539 + CA265_RS24180 0.29 +0.8 5,890,540 - CA265_RS24180 0.29 +0.1 5,890,558 + CA265_RS24180 0.29 -0.3 5,890,559 - CA265_RS24180 0.29 -1.4 5,890,690 + CA265_RS24180 0.34 -0.8 5,890,691 - CA265_RS24180 0.34 -0.2 5,890,691 - CA265_RS24180 0.34 -0.0 5,890,756 + CA265_RS24180 0.36 -0.7 5,890,775 + CA265_RS24180 0.36 -0.8 5,890,954 - CA265_RS24180 0.42 -0.6 5,890,961 - CA265_RS24180 0.42 -1.1 5,891,003 - CA265_RS24180 0.43 +2.2 5,891,005 + CA265_RS24180 0.43 -0.7 5,891,033 - CA265_RS24180 0.44 +0.1 5,891,037 - CA265_RS24180 0.44 +1.1 5,891,125 + CA265_RS24180 0.47 -0.1 5,891,169 - CA265_RS24180 0.49 -1.2 5,891,169 - CA265_RS24180 0.49 -0.5 5,891,171 + CA265_RS24180 0.49 -0.1 5,891,206 + CA265_RS24180 0.50 -0.3 5,891,206 + CA265_RS24180 0.50 -0.9 5,891,210 + CA265_RS24180 0.50 -1.3 5,891,211 - CA265_RS24180 0.50 -0.1 5,891,243 + CA265_RS24180 0.51 -0.5 5,891,244 - CA265_RS24180 0.51 -0.7 5,891,329 + CA265_RS24180 0.54 +0.1 5,891,366 + CA265_RS24180 0.55 -0.3 5,891,367 - CA265_RS24180 0.55 -2.7 5,891,388 - CA265_RS24180 0.55 -1.5 5,891,405 + CA265_RS24180 0.56 +0.3 5,891,406 - CA265_RS24180 0.56 -0.1 5,891,407 + CA265_RS24180 0.56 -0.1 5,891,407 + CA265_RS24180 0.56 +0.0 5,891,407 + CA265_RS24180 0.56 -0.8 5,891,407 + CA265_RS24180 0.56 -1.4 5,891,408 - CA265_RS24180 0.56 -0.3 5,891,408 - CA265_RS24180 0.56 -1.3 5,891,412 - CA265_RS24180 0.56 -0.2 5,891,456 - CA265_RS24180 0.58 -0.4 5,891,490 - CA265_RS24180 0.59 -1.2 5,891,504 + CA265_RS24180 0.59 +0.6 5,891,513 - CA265_RS24180 0.59 -0.2 5,891,620 + CA265_RS24180 0.63 -1.3 5,891,624 + CA265_RS24180 0.63 -1.6 5,891,624 + CA265_RS24180 0.63 +0.2 5,891,654 + CA265_RS24180 0.64 -0.8 5,891,666 - CA265_RS24180 0.64 -0.3 5,891,676 - CA265_RS24180 0.64 +0.0 5,891,695 + CA265_RS24180 0.65 -0.7 5,891,726 + CA265_RS24180 0.66 -0.9 5,891,829 - CA265_RS24180 0.69 +0.0 5,891,829 - CA265_RS24180 0.69 -1.2 5,891,872 + CA265_RS24180 0.71 -1.9 5,891,915 + CA265_RS24180 0.72 -0.6 5,891,916 - CA265_RS24180 0.72 -1.3 5,891,916 - CA265_RS24180 0.72 +0.2 5,891,916 - CA265_RS24180 0.72 -0.7 5,891,916 - CA265_RS24180 0.72 +0.4 5,891,916 - CA265_RS24180 0.72 -1.3 5,891,974 + CA265_RS24180 0.74 +0.8 5,891,974 + CA265_RS24180 0.74 -0.5 5,891,992 + CA265_RS24180 0.74 -0.6 5,892,047 + CA265_RS24180 0.76 -0.5 5,892,047 + CA265_RS24180 0.76 -0.8 5,892,047 + CA265_RS24180 0.76 +0.3 5,892,115 - CA265_RS24180 0.78 -1.6 5,892,138 - CA265_RS24180 0.79 -0.7 5,892,138 - CA265_RS24180 0.79 +1.0 5,892,138 - CA265_RS24180 0.79 -1.3 5,892,157 + CA265_RS24180 0.79 -0.5 5,892,180 - CA265_RS24180 0.80 -0.7 5,892,185 - CA265_RS24180 0.80 -0.1 5,892,227 - CA265_RS24180 0.82 -0.1 5,892,252 - CA265_RS24180 0.82 +0.5 5,892,365 - CA265_RS24180 0.86 -0.9 5,892,365 - CA265_RS24180 0.86 -1.3 5,892,394 + CA265_RS24180 0.87 -1.3 5,892,395 - CA265_RS24180 0.87 -0.9 5,892,395 - CA265_RS24180 0.87 +0.6 5,892,476 + CA265_RS24180 0.89 +0.6 5,892,506 - +0.6 5,892,539 - -1.2 5,892,545 - -0.5 5,892,548 + -1.1 5,892,549 - +0.2 5,892,673 + +1.1 5,892,677 + -1.0 5,892,680 + -0.4 5,892,680 + +0.3 5,892,681 - -0.5 5,892,726 + -2.6 5,892,731 + -0.3 5,892,732 - +0.2 5,892,732 - +0.9 5,892,789 - -0.7 5,892,795 - +0.8 5,892,795 - -0.9 5,892,804 - -0.9 5,892,818 + -0.1 5,892,819 - +0.1 5,892,840 - +1.6 5,892,923 + -0.8 5,892,928 + -1.0 5,892,975 - -1.5 5,893,022 + -2.1 5,893,060 + CA265_RS24185 0.13 -0.4 5,893,060 + CA265_RS24185 0.13 +0.8 5,893,061 - CA265_RS24185 0.13 -0.7 5,893,061 - CA265_RS24185 0.13 -1.8 5,893,061 - CA265_RS24185 0.13 -1.1 5,893,067 - CA265_RS24185 0.14 -1.3 5,893,120 + CA265_RS24185 0.19 -0.5 5,893,121 - CA265_RS24185 0.19 +1.2 5,893,160 - CA265_RS24185 0.23 +0.1 5,893,176 + CA265_RS24185 0.24 +0.9 5,893,177 - CA265_RS24185 0.24 -1.9 5,893,289 - CA265_RS24185 0.35 -1.1 5,893,406 + CA265_RS24185 0.46 -0.3 5,893,474 + CA265_RS24185 0.52 -0.5 5,893,486 + CA265_RS24185 0.53 -2.3 5,893,490 - CA265_RS24185 0.54 -0.7 5,893,552 + CA265_RS24185 0.59 -0.4 5,893,623 - CA265_RS24185 0.66 +0.2 5,893,636 - CA265_RS24185 0.67 -0.3 5,893,731 + CA265_RS24185 0.76 -0.6 5,893,731 + CA265_RS24185 0.76 -0.7 5,893,732 - CA265_RS24185 0.76 +0.9 5,893,764 - CA265_RS24185 0.79 -0.4 5,893,771 + CA265_RS24185 0.80 -0.2 5,893,772 - CA265_RS24185 0.80 -1.6
Or see this region's nucleotide sequence