Experiment: R2A with Lomefloxacin 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23555 and CA265_RS23560 are separated by 60 nucleotides CA265_RS23560 and CA265_RS23565 are separated by 72 nucleotides CA265_RS23565 and CA265_RS23570 overlap by 1 nucleotides
CA265_RS23555: CA265_RS23555 - NADH-quinone oxidoreductase subunit F, at 5,756,954 to 5,758,321
_RS23555
CA265_RS23560: CA265_RS23560 - DNA-binding protein, at 5,758,382 to 5,758,921
_RS23560
CA265_RS23565: CA265_RS23565 - NADH dehydrogenase, at 5,758,994 to 5,760,004
_RS23565
CA265_RS23570: CA265_RS23570 - NADH-quinone oxidoreductase subunit H, at 5,760,004 to 5,761,041
_RS23570
Position (kb) 5758
5759
5760
5761 Strain fitness (log2 ratio) -2
-1
0
1 at 5758.262 kb on + strand at 5758.375 kb on + strand at 5758.425 kb on + strand at 5758.437 kb on + strand, within CA265_RS23560 at 5758.467 kb on + strand, within CA265_RS23560 at 5758.467 kb on + strand, within CA265_RS23560 at 5758.504 kb on + strand, within CA265_RS23560 at 5758.534 kb on + strand, within CA265_RS23560 at 5758.614 kb on + strand, within CA265_RS23560 at 5758.614 kb on + strand, within CA265_RS23560 at 5758.707 kb on + strand, within CA265_RS23560 at 5758.747 kb on + strand, within CA265_RS23560 at 5758.762 kb on - strand at 5758.762 kb on - strand, within CA265_RS23560 at 5758.813 kb on + strand, within CA265_RS23560 at 5758.814 kb on - strand, within CA265_RS23560 at 5758.860 kb on + strand, within CA265_RS23560 at 5758.860 kb on + strand, within CA265_RS23560 at 5758.959 kb on + strand at 5758.974 kb on + strand at 5758.983 kb on + strand at 5759.821 kb on + strand, within CA265_RS23565 at 5759.887 kb on + strand, within CA265_RS23565 at 5759.982 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.1 mM remove 5,758,262 + -1.2 5,758,375 + -1.1 5,758,425 + -0.2 5,758,437 + CA265_RS23560 0.10 +0.5 5,758,467 + CA265_RS23560 0.16 +0.2 5,758,467 + CA265_RS23560 0.16 -1.2 5,758,504 + CA265_RS23560 0.23 -0.6 5,758,534 + CA265_RS23560 0.28 -1.3 5,758,614 + CA265_RS23560 0.43 +0.7 5,758,614 + CA265_RS23560 0.43 +0.7 5,758,707 + CA265_RS23560 0.60 -1.1 5,758,747 + CA265_RS23560 0.68 -0.2 5,758,762 - +0.9 5,758,762 - CA265_RS23560 0.70 -1.8 5,758,813 + CA265_RS23560 0.80 -1.5 5,758,814 - CA265_RS23560 0.80 -1.5 5,758,860 + CA265_RS23560 0.89 -0.5 5,758,860 + CA265_RS23560 0.89 +0.2 5,758,959 + +0.8 5,758,974 + -2.3 5,758,983 + -1.4 5,759,821 + CA265_RS23565 0.82 -0.1 5,759,887 + CA265_RS23565 0.88 -1.3 5,759,982 + -0.8
Or see this region's nucleotide sequence