Experiment: R2A with Lomefloxacin 0.1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23005 and CA265_RS23010 are separated by 10 nucleotides CA265_RS23010 and CA265_RS23015 are separated by 48 nucleotides
CA265_RS23005: CA265_RS23005 - hypothetical protein, at 5,632,025 to 5,633,425
_RS23005
CA265_RS23010: CA265_RS23010 - hydrophobe/amphiphile efflux-1 family RND transporter, at 5,633,436 to 5,636,612
_RS23010
CA265_RS23015: CA265_RS23015 - efflux transporter periplasmic adaptor subunit, at 5,636,661 to 5,637,830
_RS23015
Position (kb) 5633
5634
5635
5636
5637 Strain fitness (log2 ratio) -2
-1
0
1 at 5632.443 kb on - strand, within CA265_RS23005 at 5632.474 kb on + strand, within CA265_RS23005 at 5632.607 kb on - strand, within CA265_RS23005 at 5632.607 kb on - strand, within CA265_RS23005 at 5632.628 kb on + strand, within CA265_RS23005 at 5632.628 kb on + strand, within CA265_RS23005 at 5632.661 kb on - strand, within CA265_RS23005 at 5632.696 kb on + strand, within CA265_RS23005 at 5632.696 kb on + strand, within CA265_RS23005 at 5632.697 kb on - strand, within CA265_RS23005 at 5632.737 kb on + strand, within CA265_RS23005 at 5632.740 kb on - strand, within CA265_RS23005 at 5632.778 kb on + strand, within CA265_RS23005 at 5632.779 kb on - strand, within CA265_RS23005 at 5632.875 kb on - strand, within CA265_RS23005 at 5632.884 kb on + strand, within CA265_RS23005 at 5632.907 kb on + strand, within CA265_RS23005 at 5632.949 kb on + strand, within CA265_RS23005 at 5632.996 kb on + strand, within CA265_RS23005 at 5633.095 kb on + strand, within CA265_RS23005 at 5633.096 kb on - strand, within CA265_RS23005 at 5633.132 kb on + strand, within CA265_RS23005 at 5633.154 kb on - strand, within CA265_RS23005 at 5633.161 kb on + strand, within CA265_RS23005 at 5633.177 kb on - strand, within CA265_RS23005 at 5633.216 kb on + strand, within CA265_RS23005 at 5633.302 kb on + strand at 5633.303 kb on - strand at 5633.309 kb on - strand at 5633.318 kb on + strand at 5633.318 kb on + strand at 5633.410 kb on + strand at 5633.410 kb on + strand at 5633.411 kb on - strand at 5633.411 kb on - strand at 5633.437 kb on + strand at 5633.437 kb on + strand at 5633.464 kb on + strand at 5633.597 kb on + strand at 5633.598 kb on - strand at 5633.604 kb on + strand at 5633.627 kb on + strand at 5633.628 kb on - strand at 5633.661 kb on + strand at 5633.661 kb on + strand at 5633.671 kb on - strand at 5633.712 kb on + strand at 5633.837 kb on + strand, within CA265_RS23010 at 5633.848 kb on + strand, within CA265_RS23010 at 5633.848 kb on + strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.863 kb on - strand, within CA265_RS23010 at 5633.889 kb on + strand, within CA265_RS23010 at 5633.890 kb on - strand, within CA265_RS23010 at 5633.890 kb on - strand, within CA265_RS23010 at 5633.939 kb on + strand, within CA265_RS23010 at 5633.940 kb on - strand, within CA265_RS23010 at 5633.941 kb on + strand, within CA265_RS23010 at 5633.942 kb on - strand, within CA265_RS23010 at 5633.950 kb on + strand, within CA265_RS23010 at 5633.971 kb on + strand, within CA265_RS23010 at 5633.971 kb on + strand, within CA265_RS23010 at 5633.991 kb on + strand, within CA265_RS23010 at 5634.025 kb on - strand, within CA265_RS23010 at 5634.025 kb on - strand, within CA265_RS23010 at 5634.055 kb on + strand, within CA265_RS23010 at 5634.061 kb on + strand, within CA265_RS23010 at 5634.061 kb on + strand, within CA265_RS23010 at 5634.104 kb on + strand, within CA265_RS23010 at 5634.161 kb on + strand, within CA265_RS23010 at 5634.161 kb on + strand, within CA265_RS23010 at 5634.163 kb on + strand, within CA265_RS23010 at 5634.163 kb on + strand, within CA265_RS23010 at 5634.164 kb on - strand, within CA265_RS23010 at 5634.183 kb on - strand, within CA265_RS23010 at 5634.212 kb on + strand, within CA265_RS23010 at 5634.259 kb on + strand, within CA265_RS23010 at 5634.259 kb on + strand, within CA265_RS23010 at 5634.315 kb on + strand, within CA265_RS23010 at 5634.316 kb on - strand, within CA265_RS23010 at 5634.367 kb on + strand, within CA265_RS23010 at 5634.367 kb on + strand, within CA265_RS23010 at 5634.368 kb on - strand, within CA265_RS23010 at 5634.370 kb on + strand, within CA265_RS23010 at 5634.371 kb on - strand, within CA265_RS23010 at 5634.371 kb on - strand, within CA265_RS23010 at 5634.448 kb on + strand, within CA265_RS23010 at 5634.531 kb on + strand, within CA265_RS23010 at 5634.532 kb on - strand, within CA265_RS23010 at 5634.551 kb on + strand, within CA265_RS23010 at 5634.651 kb on + strand, within CA265_RS23010 at 5634.651 kb on + strand, within CA265_RS23010 at 5634.673 kb on - strand, within CA265_RS23010 at 5634.684 kb on - strand, within CA265_RS23010 at 5634.740 kb on + strand, within CA265_RS23010 at 5634.741 kb on - strand, within CA265_RS23010 at 5634.741 kb on - strand, within CA265_RS23010 at 5634.746 kb on - strand, within CA265_RS23010 at 5634.746 kb on - strand, within CA265_RS23010 at 5634.746 kb on - strand, within CA265_RS23010 at 5634.788 kb on + strand, within CA265_RS23010 at 5634.789 kb on - strand, within CA265_RS23010 at 5634.795 kb on - strand, within CA265_RS23010 at 5634.801 kb on + strand, within CA265_RS23010 at 5634.810 kb on + strand, within CA265_RS23010 at 5634.815 kb on + strand, within CA265_RS23010 at 5634.819 kb on + strand, within CA265_RS23010 at 5634.843 kb on - strand, within CA265_RS23010 at 5634.870 kb on - strand, within CA265_RS23010 at 5634.993 kb on + strand, within CA265_RS23010 at 5635.144 kb on - strand, within CA265_RS23010 at 5635.203 kb on + strand, within CA265_RS23010 at 5635.283 kb on + strand, within CA265_RS23010 at 5635.434 kb on + strand, within CA265_RS23010 at 5635.454 kb on + strand, within CA265_RS23010 at 5635.455 kb on - strand, within CA265_RS23010 at 5635.490 kb on + strand, within CA265_RS23010 at 5635.551 kb on - strand, within CA265_RS23010 at 5635.554 kb on + strand, within CA265_RS23010 at 5635.554 kb on + strand, within CA265_RS23010 at 5635.555 kb on - strand, within CA265_RS23010 at 5635.632 kb on + strand, within CA265_RS23010 at 5635.713 kb on + strand, within CA265_RS23010 at 5635.713 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.758 kb on + strand, within CA265_RS23010 at 5635.787 kb on - strand, within CA265_RS23010 at 5635.865 kb on + strand, within CA265_RS23010 at 5635.913 kb on - strand, within CA265_RS23010 at 5636.001 kb on + strand, within CA265_RS23010 at 5636.001 kb on + strand, within CA265_RS23010 at 5636.002 kb on - strand, within CA265_RS23010 at 5636.034 kb on + strand, within CA265_RS23010 at 5636.054 kb on + strand, within CA265_RS23010 at 5636.054 kb on + strand, within CA265_RS23010 at 5636.144 kb on - strand, within CA265_RS23010 at 5636.186 kb on - strand, within CA265_RS23010 at 5636.199 kb on - strand, within CA265_RS23010 at 5636.233 kb on - strand, within CA265_RS23010 at 5636.260 kb on - strand, within CA265_RS23010 at 5636.364 kb on - strand at 5636.383 kb on + strand at 5636.383 kb on + strand at 5636.538 kb on + strand at 5636.539 kb on - strand at 5636.541 kb on + strand at 5636.541 kb on + strand at 5636.548 kb on - strand at 5636.562 kb on - strand at 5636.570 kb on + strand at 5636.570 kb on + strand at 5636.616 kb on + strand at 5636.617 kb on - strand at 5636.627 kb on - strand at 5636.655 kb on - strand at 5636.655 kb on - strand at 5636.753 kb on + strand at 5637.067 kb on + strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.068 kb on - strand, within CA265_RS23015 at 5637.131 kb on + strand, within CA265_RS23015 at 5637.140 kb on + strand, within CA265_RS23015 at 5637.143 kb on - strand, within CA265_RS23015 at 5637.187 kb on + strand, within CA265_RS23015 at 5637.188 kb on - strand, within CA265_RS23015 at 5637.188 kb on - strand, within CA265_RS23015 at 5637.273 kb on - strand, within CA265_RS23015 at 5637.292 kb on - strand, within CA265_RS23015 at 5637.292 kb on - strand, within CA265_RS23015 at 5637.311 kb on + strand, within CA265_RS23015 at 5637.312 kb on - strand, within CA265_RS23015 at 5637.318 kb on + strand, within CA265_RS23015 at 5637.319 kb on - strand, within CA265_RS23015 at 5637.387 kb on + strand, within CA265_RS23015 at 5637.453 kb on + strand, within CA265_RS23015 at 5637.457 kb on + strand, within CA265_RS23015 at 5637.475 kb on - strand, within CA265_RS23015 at 5637.529 kb on + strand, within CA265_RS23015
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.1 mM remove 5,632,443 - CA265_RS23005 0.30 -0.1 5,632,474 + CA265_RS23005 0.32 +0.3 5,632,607 - CA265_RS23005 0.42 -1.1 5,632,607 - CA265_RS23005 0.42 -0.1 5,632,628 + CA265_RS23005 0.43 -0.3 5,632,628 + CA265_RS23005 0.43 -0.4 5,632,661 - CA265_RS23005 0.45 -0.2 5,632,696 + CA265_RS23005 0.48 -1.0 5,632,696 + CA265_RS23005 0.48 +0.2 5,632,697 - CA265_RS23005 0.48 -0.0 5,632,737 + CA265_RS23005 0.51 -0.5 5,632,740 - CA265_RS23005 0.51 -0.3 5,632,778 + CA265_RS23005 0.54 -0.2 5,632,779 - CA265_RS23005 0.54 -0.6 5,632,875 - CA265_RS23005 0.61 +0.5 5,632,884 + CA265_RS23005 0.61 -0.3 5,632,907 + CA265_RS23005 0.63 +0.8 5,632,949 + CA265_RS23005 0.66 -1.0 5,632,996 + CA265_RS23005 0.69 -0.5 5,633,095 + CA265_RS23005 0.76 -0.3 5,633,096 - CA265_RS23005 0.76 +0.1 5,633,132 + CA265_RS23005 0.79 -0.3 5,633,154 - CA265_RS23005 0.81 -0.3 5,633,161 + CA265_RS23005 0.81 +0.7 5,633,177 - CA265_RS23005 0.82 +0.3 5,633,216 + CA265_RS23005 0.85 -0.9 5,633,302 + +0.2 5,633,303 - -0.6 5,633,309 - -0.9 5,633,318 + -0.5 5,633,318 + -0.2 5,633,410 + +0.9 5,633,410 + +0.4 5,633,411 - -0.6 5,633,411 - -0.3 5,633,437 + -0.7 5,633,437 + +0.1 5,633,464 + -0.2 5,633,597 + -0.4 5,633,598 - -1.0 5,633,604 + -0.3 5,633,627 + +0.1 5,633,628 - +0.3 5,633,661 + -0.4 5,633,661 + -0.4 5,633,671 - -0.4 5,633,712 + +0.0 5,633,837 + CA265_RS23010 0.13 -0.4 5,633,848 + CA265_RS23010 0.13 -1.2 5,633,848 + CA265_RS23010 0.13 -0.6 5,633,863 - CA265_RS23010 0.13 -0.1 5,633,863 - CA265_RS23010 0.13 +0.6 5,633,863 - CA265_RS23010 0.13 -1.0 5,633,889 + CA265_RS23010 0.14 -0.1 5,633,890 - CA265_RS23010 0.14 +0.1 5,633,890 - CA265_RS23010 0.14 -0.9 5,633,939 + CA265_RS23010 0.16 -0.8 5,633,940 - CA265_RS23010 0.16 -0.2 5,633,941 + CA265_RS23010 0.16 +0.3 5,633,942 - CA265_RS23010 0.16 -1.1 5,633,950 + CA265_RS23010 0.16 -1.9 5,633,971 + CA265_RS23010 0.17 +1.6 5,633,971 + CA265_RS23010 0.17 +1.1 5,633,991 + CA265_RS23010 0.17 -1.4 5,634,025 - CA265_RS23010 0.19 +0.3 5,634,025 - CA265_RS23010 0.19 +0.3 5,634,055 + CA265_RS23010 0.19 +0.4 5,634,061 + CA265_RS23010 0.20 +0.7 5,634,061 + CA265_RS23010 0.20 +0.4 5,634,104 + CA265_RS23010 0.21 +0.5 5,634,161 + CA265_RS23010 0.23 +0.5 5,634,161 + CA265_RS23010 0.23 -0.4 5,634,163 + CA265_RS23010 0.23 +0.4 5,634,163 + CA265_RS23010 0.23 -0.7 5,634,164 - CA265_RS23010 0.23 -0.5 5,634,183 - CA265_RS23010 0.24 +0.8 5,634,212 + CA265_RS23010 0.24 -0.1 5,634,259 + CA265_RS23010 0.26 -0.8 5,634,259 + CA265_RS23010 0.26 -0.5 5,634,315 + CA265_RS23010 0.28 +0.3 5,634,316 - CA265_RS23010 0.28 -0.7 5,634,367 + CA265_RS23010 0.29 -0.8 5,634,367 + CA265_RS23010 0.29 -0.2 5,634,368 - CA265_RS23010 0.29 -0.7 5,634,370 + CA265_RS23010 0.29 -0.4 5,634,371 - CA265_RS23010 0.29 -0.1 5,634,371 - CA265_RS23010 0.29 -0.3 5,634,448 + CA265_RS23010 0.32 -0.1 5,634,531 + CA265_RS23010 0.34 -0.1 5,634,532 - CA265_RS23010 0.34 -0.8 5,634,551 + CA265_RS23010 0.35 -0.0 5,634,651 + CA265_RS23010 0.38 +0.1 5,634,651 + CA265_RS23010 0.38 -0.1 5,634,673 - CA265_RS23010 0.39 -0.3 5,634,684 - CA265_RS23010 0.39 -0.4 5,634,740 + CA265_RS23010 0.41 -0.3 5,634,741 - CA265_RS23010 0.41 -0.4 5,634,741 - CA265_RS23010 0.41 -0.7 5,634,746 - CA265_RS23010 0.41 +0.4 5,634,746 - CA265_RS23010 0.41 +0.2 5,634,746 - CA265_RS23010 0.41 -0.9 5,634,788 + CA265_RS23010 0.43 +0.3 5,634,789 - CA265_RS23010 0.43 +0.5 5,634,795 - CA265_RS23010 0.43 -0.3 5,634,801 + CA265_RS23010 0.43 -0.3 5,634,810 + CA265_RS23010 0.43 +0.0 5,634,815 + CA265_RS23010 0.43 -0.3 5,634,819 + CA265_RS23010 0.44 -0.1 5,634,843 - CA265_RS23010 0.44 +0.1 5,634,870 - CA265_RS23010 0.45 -0.8 5,634,993 + CA265_RS23010 0.49 -0.0 5,635,144 - CA265_RS23010 0.54 +0.6 5,635,203 + CA265_RS23010 0.56 -0.2 5,635,283 + CA265_RS23010 0.58 -0.2 5,635,434 + CA265_RS23010 0.63 -1.0 5,635,454 + CA265_RS23010 0.64 -1.1 5,635,455 - CA265_RS23010 0.64 -0.4 5,635,490 + CA265_RS23010 0.65 +0.6 5,635,551 - CA265_RS23010 0.67 -0.2 5,635,554 + CA265_RS23010 0.67 +0.2 5,635,554 + CA265_RS23010 0.67 -0.4 5,635,555 - CA265_RS23010 0.67 -0.4 5,635,632 + CA265_RS23010 0.69 -1.6 5,635,713 + CA265_RS23010 0.72 -0.2 5,635,713 + CA265_RS23010 0.72 -0.7 5,635,758 + CA265_RS23010 0.73 +0.5 5,635,758 + CA265_RS23010 0.73 +0.7 5,635,758 + CA265_RS23010 0.73 +0.2 5,635,758 + CA265_RS23010 0.73 -0.4 5,635,787 - CA265_RS23010 0.74 -1.4 5,635,865 + CA265_RS23010 0.76 -0.3 5,635,913 - CA265_RS23010 0.78 -0.1 5,636,001 + CA265_RS23010 0.81 -0.5 5,636,001 + CA265_RS23010 0.81 -0.4 5,636,002 - CA265_RS23010 0.81 +1.2 5,636,034 + CA265_RS23010 0.82 +0.1 5,636,054 + CA265_RS23010 0.82 -0.9 5,636,054 + CA265_RS23010 0.82 +0.5 5,636,144 - CA265_RS23010 0.85 -0.1 5,636,186 - CA265_RS23010 0.87 -0.2 5,636,199 - CA265_RS23010 0.87 -0.3 5,636,233 - CA265_RS23010 0.88 -0.1 5,636,260 - CA265_RS23010 0.89 +0.6 5,636,364 - -1.3 5,636,383 + -0.4 5,636,383 + +0.1 5,636,538 + +0.3 5,636,539 - +0.9 5,636,541 + -0.6 5,636,541 + -0.1 5,636,548 - -1.2 5,636,562 - -0.4 5,636,570 + -0.3 5,636,570 + -0.9 5,636,616 + -0.2 5,636,617 - +0.4 5,636,627 - -0.1 5,636,655 - -0.2 5,636,655 - +0.1 5,636,753 + -1.5 5,637,067 + CA265_RS23015 0.35 -1.3 5,637,068 - CA265_RS23015 0.35 -0.3 5,637,068 - CA265_RS23015 0.35 +1.0 5,637,068 - CA265_RS23015 0.35 +1.2 5,637,131 + CA265_RS23015 0.40 -1.1 5,637,140 + CA265_RS23015 0.41 +0.0 5,637,143 - CA265_RS23015 0.41 +0.3 5,637,187 + CA265_RS23015 0.45 +1.0 5,637,188 - CA265_RS23015 0.45 -1.0 5,637,188 - CA265_RS23015 0.45 +0.1 5,637,273 - CA265_RS23015 0.52 +0.1 5,637,292 - CA265_RS23015 0.54 -0.3 5,637,292 - CA265_RS23015 0.54 +1.3 5,637,311 + CA265_RS23015 0.56 -0.4 5,637,312 - CA265_RS23015 0.56 +0.4 5,637,318 + CA265_RS23015 0.56 +0.2 5,637,319 - CA265_RS23015 0.56 +0.2 5,637,387 + CA265_RS23015 0.62 -0.6 5,637,453 + CA265_RS23015 0.68 -0.1 5,637,457 + CA265_RS23015 0.68 -0.1 5,637,475 - CA265_RS23015 0.70 -0.0 5,637,529 + CA265_RS23015 0.74 -0.1
Or see this region's nucleotide sequence