Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS06875

Experiment: R2A with Lomefloxacin 0.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Lomefloxacin 0.1 mM
1,707,932	-		CA265_RS06870	0.11	-0.7
1,707,951	-		CA265_RS06870	0.13	+0.3
1,708,007	+		CA265_RS06870	0.18	-0.6
1,708,026	+		CA265_RS06870	0.20	-0.4
1,708,045	-		CA265_RS06870	0.22	+0.2
1,708,066	+		CA265_RS06870	0.24	-1.4
1,708,072	+		CA265_RS06870	0.24	-0.6
1,708,078	+		CA265_RS06870	0.25	-0.2
1,708,155	+		CA265_RS06870	0.32	+0.4
1,708,155	+		CA265_RS06870	0.32	-0.7
1,708,165	+		CA265_RS06870	0.33	-0.3
1,708,288	+		CA265_RS06870	0.44	-0.3
1,708,289	-		CA265_RS06870	0.44	-0.5
1,708,300	+		CA265_RS06870	0.45	+0.3
1,708,360	+		CA265_RS06870	0.51	+0.0
1,708,361	-		CA265_RS06870	0.51	-0.4
1,708,385	-		CA265_RS06870	0.53	-1.2
1,708,420	+		CA265_RS06870	0.56	-0.8
1,708,420	+		CA265_RS06870	0.56	-0.8
1,708,459	-		CA265_RS06870	0.60	+1.8
1,708,503	+		CA265_RS06870	0.64	-0.8
1,708,504	-		CA265_RS06870	0.64	-0.1
1,708,636	-		CA265_RS06870	0.76	+0.4
1,708,636	-		CA265_RS06870	0.76	-0.1
1,708,651	+		CA265_RS06870	0.78	-0.2
1,708,655	+		CA265_RS06870	0.78	-0.3
1,708,655	+		CA265_RS06870	0.78	-0.8
1,708,656	-		CA265_RS06870	0.78	-0.4
1,708,656	-		CA265_RS06870	0.78	-0.9
1,708,656	-		CA265_RS06870	0.78	-1.2
1,708,656	-		CA265_RS06870	0.78	-0.2
1,708,660	+		CA265_RS06870	0.79	-0.9
1,708,661	-		CA265_RS06870	0.79	-0.1
1,708,693	+		CA265_RS06870	0.82	-0.3
1,708,693	+		CA265_RS06870	0.82	-0.3
1,708,707	+		CA265_RS06870	0.83	-0.7
1,708,751	+		CA265_RS06870	0.87	-0.3
1,708,751	+		CA265_RS06870	0.87	-0.0
1,708,758	+		CA265_RS06870	0.88	-1.2
1,708,759	-		CA265_RS06870	0.88	-1.0
1,708,797	+				+0.1
1,708,906	+				+0.3
1,708,907	-				-0.4
1,708,910	+				-0.5
1,708,951	+				-0.3
1,708,960	-				-1.9
1,708,967	-				-1.5
1,709,001	-				+0.1
1,709,011	+				-0.9
1,709,026	+				-2.7
1,709,130	+				-0.9
1,709,145	-				-0.7
1,709,194	-				-0.0
1,709,197	+				+0.7
1,709,317	+		CA265_RS06875	0.13	-1.5
1,709,318	-		CA265_RS06875	0.13	-0.3
1,709,347	+		CA265_RS06875	0.14	-1.2
1,709,347	+		CA265_RS06875	0.14	-0.7
1,709,381	-		CA265_RS06875	0.15	-0.6
1,709,385	-		CA265_RS06875	0.15	+0.4
1,709,483	-		CA265_RS06875	0.18	-1.4
1,709,570	-		CA265_RS06875	0.21	+0.1
1,709,639	-		CA265_RS06875	0.23	-1.0
1,709,704	-		CA265_RS06875	0.25	+0.2
1,709,751	-		CA265_RS06875	0.26	+0.3
1,709,782	+		CA265_RS06875	0.27	-0.9
1,709,782	+		CA265_RS06875	0.27	+0.5
1,709,801	+		CA265_RS06875	0.28	+0.1
1,709,807	-		CA265_RS06875	0.28	-0.4
1,709,888	+		CA265_RS06875	0.31	-1.0
1,709,889	-		CA265_RS06875	0.31	-1.0
1,709,896	-		CA265_RS06875	0.31	-0.6
1,710,085	+		CA265_RS06875	0.37	+0.4
1,710,100	+		CA265_RS06875	0.37	-0.5
1,710,117	+		CA265_RS06875	0.38	+0.6
1,710,138	+		CA265_RS06875	0.39	-0.4
1,710,138	+		CA265_RS06875	0.39	-1.8
1,710,214	+		CA265_RS06875	0.41	+0.5
1,710,280	-		CA265_RS06875	0.43	+1.6
1,710,280	-		CA265_RS06875	0.43	+0.0
1,710,400	-		CA265_RS06875	0.47	-1.4
1,710,466	-		CA265_RS06875	0.49	-0.4
1,710,529	-		CA265_RS06875	0.51	+0.2
1,710,529	-		CA265_RS06875	0.51	-1.9
1,710,531	+		CA265_RS06875	0.51	-0.5
1,710,532	-		CA265_RS06875	0.51	-0.5
1,710,532	-		CA265_RS06875	0.51	-0.3
1,710,532	-		CA265_RS06875	0.51	-0.6
1,710,592	-		CA265_RS06875	0.53	-0.4
1,710,644	+		CA265_RS06875	0.54	-0.7
1,710,686	-		CA265_RS06875	0.56	-0.7
1,710,839	-		CA265_RS06875	0.61	-0.2
1,711,056	+		CA265_RS06875	0.67	-1.3
1,711,163	-		CA265_RS06875	0.71	-1.4
1,711,168	-		CA265_RS06875	0.71	-0.1
1,711,186	+		CA265_RS06875	0.72	-0.3
1,711,187	-		CA265_RS06875	0.72	-0.7
1,711,211	+		CA265_RS06875	0.72	+1.0
1,711,230	+		CA265_RS06875	0.73	-2.3
1,711,274	-		CA265_RS06875	0.74	-0.9
1,711,366	+		CA265_RS06875	0.77	-0.4
1,711,382	+		CA265_RS06875	0.78	+0.4
1,711,382	+		CA265_RS06875	0.78	+0.2
1,711,540	+		CA265_RS06875	0.83	+1.6
1,711,540	+		CA265_RS06875	0.83	-0.9
1,711,545	-		CA265_RS06875	0.83	-0.7
1,711,547	-		CA265_RS06875	0.83	+1.5
1,711,564	-		CA265_RS06875	0.84	-2.2
1,711,731	+		CA265_RS06875	0.89	-1.2
1,711,845	+				-0.1
1,711,864	+				+0.7
1,711,865	-				-0.1
1,711,994	+				-0.6
1,711,995	-				-0.6
1,712,071	-				+0.3
1,712,074	-				-0.6
1,712,093	+				-0.4
1,712,097	+				-0.2
1,712,113	+				-0.8
1,712,134	-				+0.0
1,712,135	+				-0.6
1,712,218	+				-0.4
1,712,219	-				-0.8
1,712,313	-		CA265_RS06880	0.16	-0.5
1,712,489	-		CA265_RS06880	0.29	-0.5
1,712,502	-		CA265_RS06880	0.29	-0.5
1,712,570	+		CA265_RS06880	0.34	-0.1
1,712,570	+		CA265_RS06880	0.34	-0.1
1,712,571	-		CA265_RS06880	0.34	-0.8
1,712,572	+		CA265_RS06880	0.34	-0.6
1,712,572	+		CA265_RS06880	0.34	-1.2
1,712,572	+		CA265_RS06880	0.34	-0.1
1,712,593	+		CA265_RS06880	0.36	-1.0
1,712,594	-		CA265_RS06880	0.36	-0.6
1,712,594	-		CA265_RS06880	0.36	+1.1
1,712,615	-		CA265_RS06880	0.37	-1.7
1,712,794	+		CA265_RS06880	0.50	+0.4
1,712,795	-				+0.6
1,712,866	+		CA265_RS06880	0.55	+1.0
1,712,888	+		CA265_RS06880	0.56	-0.2
1,712,944	+		CA265_RS06880	0.60	-0.3
1,712,978	+		CA265_RS06880	0.63	+0.4
1,713,013	+		CA265_RS06880	0.65	-0.1
1,713,020	+		CA265_RS06880	0.66	-0.3
1,713,057	-		CA265_RS06880	0.68	-2.0
1,713,068	+		CA265_RS06880	0.69	-0.9
1,713,068	+		CA265_RS06880	0.69	-0.1
1,713,069	-		CA265_RS06880	0.69	+0.2