Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00630

Experiment: R2A with Lomefloxacin 0.1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00620 and CA265_RS00625 are separated by 205 nucleotidesCA265_RS00625 and CA265_RS00630 are separated by 8 nucleotidesCA265_RS00630 and CA265_RS00635 overlap by 11 nucleotides CA265_RS00620: CA265_RS00620 - hypothetical protein, at 141,426 to 142,385 _RS00620 CA265_RS00625: CA265_RS00625 - hypothetical protein, at 142,591 to 143,238 _RS00625 CA265_RS00630: CA265_RS00630 - hypothetical protein, at 143,247 to 144,344 _RS00630 CA265_RS00635: CA265_RS00635 - hypothetical protein, at 144,334 to 145,392 _RS00635 Position (kb) 143 144 145Strain fitness (log2 ratio) -3 -2 -1 0 1at 142.271 kb on + strand, within CA265_RS00620at 142.291 kb on - strandat 142.579 kb on - strandat 142.596 kb on + strandat 142.596 kb on + strandat 142.597 kb on - strandat 142.601 kb on + strandat 142.602 kb on - strandat 142.879 kb on + strand, within CA265_RS00625at 142.880 kb on - strand, within CA265_RS00625at 142.928 kb on + strand, within CA265_RS00625at 142.928 kb on + strandat 142.929 kb on - strand, within CA265_RS00625at 142.929 kb on - strand, within CA265_RS00625at 142.934 kb on + strand, within CA265_RS00625at 143.001 kb on - strand, within CA265_RS00625at 143.053 kb on + strand, within CA265_RS00625at 143.053 kb on + strand, within CA265_RS00625at 143.140 kb on - strand, within CA265_RS00625at 143.155 kb on + strand, within CA265_RS00625at 143.155 kb on + strand, within CA265_RS00625at 143.156 kb on - strand, within CA265_RS00625at 143.204 kb on - strandat 143.204 kb on - strandat 143.224 kb on - strandat 143.232 kb on + strandat 143.237 kb on - strandat 143.241 kb on - strandat 143.264 kb on + strandat 143.267 kb on - strandat 143.312 kb on - strandat 143.312 kb on - strandat 143.408 kb on + strand, within CA265_RS00630at 143.454 kb on + strand, within CA265_RS00630at 143.585 kb on + strand, within CA265_RS00630at 143.586 kb on - strand, within CA265_RS00630at 143.586 kb on - strand, within CA265_RS00630at 143.630 kb on - strand, within CA265_RS00630at 143.642 kb on - strand, within CA265_RS00630at 143.681 kb on + strand, within CA265_RS00630at 143.758 kb on - strand, within CA265_RS00630at 143.762 kb on + strand, within CA265_RS00630at 143.763 kb on - strand, within CA265_RS00630at 143.766 kb on - strand, within CA265_RS00630at 143.792 kb on - strand, within CA265_RS00630at 143.851 kb on + strand, within CA265_RS00630at 143.866 kb on - strand, within CA265_RS00630at 143.878 kb on - strand, within CA265_RS00630at 143.878 kb on - strand, within CA265_RS00630at 143.881 kb on + strand, within CA265_RS00630at 143.882 kb on - strand, within CA265_RS00630at 143.882 kb on - strand, within CA265_RS00630at 143.886 kb on + strand, within CA265_RS00630at 143.887 kb on - strand, within CA265_RS00630at 143.887 kb on - strand, within CA265_RS00630at 143.932 kb on + strand, within CA265_RS00630at 144.008 kb on - strand, within CA265_RS00630at 144.008 kb on - strand, within CA265_RS00630at 144.044 kb on + strand, within CA265_RS00630at 144.083 kb on + strand, within CA265_RS00630at 144.084 kb on - strand, within CA265_RS00630at 144.154 kb on + strand, within CA265_RS00630at 144.190 kb on - strand, within CA265_RS00630at 144.200 kb on + strand, within CA265_RS00630at 144.220 kb on + strand, within CA265_RS00630at 144.220 kb on + strand, within CA265_RS00630at 144.221 kb on - strand, within CA265_RS00630at 144.239 kb on + strandat 144.240 kb on - strandat 144.240 kb on - strandat 144.342 kb on + strandat 144.357 kb on - strandat 144.388 kb on + strandat 144.420 kb on + strandat 144.421 kb on - strandat 144.464 kb on - strand, within CA265_RS00635at 144.491 kb on + strand, within CA265_RS00635at 144.499 kb on + strand, within CA265_RS00635at 144.499 kb on + strand, within CA265_RS00635at 144.542 kb on + strand, within CA265_RS00635at 144.543 kb on - strand, within CA265_RS00635at 144.545 kb on - strand, within CA265_RS00635at 144.545 kb on - strand, within CA265_RS00635at 144.545 kb on - strand, within CA265_RS00635at 144.600 kb on + strand, within CA265_RS00635at 144.651 kb on + strand, within CA265_RS00635at 144.780 kb on + strand, within CA265_RS00635at 144.780 kb on + strand, within CA265_RS00635at 144.787 kb on + strand, within CA265_RS00635at 144.787 kb on + strand, within CA265_RS00635at 144.802 kb on + strand, within CA265_RS00635at 144.814 kb on + strand, within CA265_RS00635at 144.829 kb on + strand, within CA265_RS00635at 144.830 kb on - strand, within CA265_RS00635at 144.834 kb on + strand, within CA265_RS00635at 144.835 kb on - strand, within CA265_RS00635at 144.919 kb on + strand, within CA265_RS00635at 144.923 kb on - strand, within CA265_RS00635at 144.923 kb on - strand, within CA265_RS00635at 144.947 kb on + strand, within CA265_RS00635at 144.952 kb on + strand, within CA265_RS00635at 144.963 kb on - strand, within CA265_RS00635at 145.003 kb on + strand, within CA265_RS00635at 145.004 kb on - strand, within CA265_RS00635at 145.007 kb on + strand, within CA265_RS00635at 145.007 kb on + strand, within CA265_RS00635at 145.008 kb on - strand, within CA265_RS00635at 145.059 kb on - strand, within CA265_RS00635at 145.224 kb on + strand, within CA265_RS00635at 145.225 kb on - strand, within CA265_RS00635at 145.225 kb on - strand, within CA265_RS00635at 145.239 kb on - strand, within CA265_RS00635at 145.259 kb on + strand, within CA265_RS00635at 145.259 kb on + strand, within CA265_RS00635at 145.259 kb on + strand, within CA265_RS00635at 145.260 kb on - strand, within CA265_RS00635at 145.260 kb on - strand, within CA265_RS00635at 145.283 kb on + strand, within CA265_RS00635at 145.283 kb on + strand, within CA265_RS00635at 145.284 kb on - strand, within CA265_RS00635at 145.298 kb on + strandat 145.326 kb on + strandat 145.327 kb on - strandat 145.327 kb on - strandat 145.327 kb on - strandat 145.327 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Lomefloxacin 0.1 mM
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142,271 + CA265_RS00620 0.88 +0.7
142,291 - -0.2
142,579 - +0.4
142,596 + +0.4
142,596 + -0.1
142,597 - +0.2
142,601 + -0.9
142,602 - +0.1
142,879 + CA265_RS00625 0.44 +0.5
142,880 - CA265_RS00625 0.45 +0.5
142,928 + CA265_RS00625 0.52 -0.2
142,928 + +1.0
142,929 - CA265_RS00625 0.52 -1.8
142,929 - CA265_RS00625 0.52 +0.4
142,934 + CA265_RS00625 0.53 +0.6
143,001 - CA265_RS00625 0.63 -0.2
143,053 + CA265_RS00625 0.71 -0.2
143,053 + CA265_RS00625 0.71 +0.2
143,140 - CA265_RS00625 0.85 -0.9
143,155 + CA265_RS00625 0.87 +1.0
143,155 + CA265_RS00625 0.87 +1.4
143,156 - CA265_RS00625 0.87 -0.2
143,204 - -0.4
143,204 - -0.4
143,224 - +0.5
143,232 + +0.7
143,237 - +0.5
143,241 - -0.1
143,264 + -0.2
143,267 - +0.3
143,312 - +0.3
143,312 - +0.9
143,408 + CA265_RS00630 0.15 -0.3
143,454 + CA265_RS00630 0.19 +0.7
143,585 + CA265_RS00630 0.31 +0.0
143,586 - CA265_RS00630 0.31 +1.7
143,586 - CA265_RS00630 0.31 +0.6
143,630 - CA265_RS00630 0.35 +0.6
143,642 - CA265_RS00630 0.36 +0.3
143,681 + CA265_RS00630 0.40 -0.4
143,758 - CA265_RS00630 0.47 +0.5
143,762 + CA265_RS00630 0.47 +0.5
143,763 - CA265_RS00630 0.47 +1.2
143,766 - CA265_RS00630 0.47 +0.2
143,792 - CA265_RS00630 0.50 +0.3
143,851 + CA265_RS00630 0.55 +0.7
143,866 - CA265_RS00630 0.56 -2.8
143,878 - CA265_RS00630 0.57 +0.7
143,878 - CA265_RS00630 0.57 +0.0
143,881 + CA265_RS00630 0.58 +0.0
143,882 - CA265_RS00630 0.58 +0.2
143,882 - CA265_RS00630 0.58 +0.7
143,886 + CA265_RS00630 0.58 -0.1
143,887 - CA265_RS00630 0.58 +0.6
143,887 - CA265_RS00630 0.58 +0.4
143,932 + CA265_RS00630 0.62 +0.6
144,008 - CA265_RS00630 0.69 +0.0
144,008 - CA265_RS00630 0.69 +0.3
144,044 + CA265_RS00630 0.73 +1.7
144,083 + CA265_RS00630 0.76 +0.7
144,084 - CA265_RS00630 0.76 -0.2
144,154 + CA265_RS00630 0.83 -0.0
144,190 - CA265_RS00630 0.86 +0.9
144,200 + CA265_RS00630 0.87 +0.3
144,220 + CA265_RS00630 0.89 +0.5
144,220 + CA265_RS00630 0.89 -0.3
144,221 - CA265_RS00630 0.89 -0.4
144,239 + +0.3
144,240 - +1.7
144,240 - +0.5
144,342 + +0.9
144,357 - -0.2
144,388 + +0.5
144,420 + -0.0
144,421 - -0.2
144,464 - CA265_RS00635 0.12 -0.1
144,491 + CA265_RS00635 0.15 -0.3
144,499 + CA265_RS00635 0.16 +1.2
144,499 + CA265_RS00635 0.16 +0.4
144,542 + CA265_RS00635 0.20 -0.3
144,543 - CA265_RS00635 0.20 +0.5
144,545 - CA265_RS00635 0.20 +0.2
144,545 - CA265_RS00635 0.20 -0.6
144,545 - CA265_RS00635 0.20 +0.2
144,600 + CA265_RS00635 0.25 -0.0
144,651 + CA265_RS00635 0.30 +0.0
144,780 + CA265_RS00635 0.42 -0.3
144,780 + CA265_RS00635 0.42 +0.0
144,787 + CA265_RS00635 0.43 -0.0
144,787 + CA265_RS00635 0.43 -0.5
144,802 + CA265_RS00635 0.44 +0.5
144,814 + CA265_RS00635 0.45 +0.1
144,829 + CA265_RS00635 0.47 -0.1
144,830 - CA265_RS00635 0.47 -1.2
144,834 + CA265_RS00635 0.47 +0.1
144,835 - CA265_RS00635 0.47 -0.3
144,919 + CA265_RS00635 0.55 -0.3
144,923 - CA265_RS00635 0.56 +0.4
144,923 - CA265_RS00635 0.56 +0.6
144,947 + CA265_RS00635 0.58 +1.1
144,952 + CA265_RS00635 0.58 -1.4
144,963 - CA265_RS00635 0.59 -0.2
145,003 + CA265_RS00635 0.63 -0.0
145,004 - CA265_RS00635 0.63 +0.2
145,007 + CA265_RS00635 0.64 +0.6
145,007 + CA265_RS00635 0.64 +0.8
145,008 - CA265_RS00635 0.64 -0.2
145,059 - CA265_RS00635 0.68 -0.1
145,224 + CA265_RS00635 0.84 -0.3
145,225 - CA265_RS00635 0.84 -0.2
145,225 - CA265_RS00635 0.84 -0.3
145,239 - CA265_RS00635 0.85 +0.5
145,259 + CA265_RS00635 0.87 +0.7
145,259 + CA265_RS00635 0.87 -0.1
145,259 + CA265_RS00635 0.87 -0.1
145,260 - CA265_RS00635 0.87 -0.7
145,260 - CA265_RS00635 0.87 +0.0
145,283 + CA265_RS00635 0.90 -0.5
145,283 + CA265_RS00635 0.90 +1.1
145,284 - CA265_RS00635 0.90 +0.7
145,298 + -0.6
145,326 + -0.9
145,327 - +0.3
145,327 - +0.8
145,327 - -1.2
145,327 - -0.3

Or see this region's nucleotide sequence