Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13770

Experiment: CDM1 without LipoicAcid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13765 and BBR_RS13770 are separated by 32 nucleotidesBBR_RS13770 and BBR_RS13775 are separated by 2 nucleotidesBBR_RS13775 and BBR_RS13780 are separated by 119 nucleotides BBR_RS13765: BBR_RS13765 - alpha/beta hydrolase, at 861,244 to 863,019 _RS13765 BBR_RS13770: BBR_RS13770 - DNA repair protein RecO, at 863,052 to 863,771 _RS13770 BBR_RS13775: BBR_RS13775 - isoprenyl transferase, at 863,774 to 864,562 _RS13775 BBR_RS13780: BBR_RS13780 - ABC transporter permease, at 864,682 to 865,458 _RS13780 Position (kb) 863 864Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 862.065 kb on - strand, within BBR_RS13765at 862.092 kb on + strand, within BBR_RS13765at 862.114 kb on + strand, within BBR_RS13765at 862.122 kb on - strand, within BBR_RS13765at 862.145 kb on - strand, within BBR_RS13765at 862.161 kb on + strand, within BBR_RS13765at 862.169 kb on - strand, within BBR_RS13765at 862.188 kb on - strand, within BBR_RS13765at 862.198 kb on - strand, within BBR_RS13765at 862.208 kb on + strand, within BBR_RS13765at 862.235 kb on - strand, within BBR_RS13765at 862.235 kb on - strand, within BBR_RS13765at 862.235 kb on - strand, within BBR_RS13765at 862.242 kb on - strand, within BBR_RS13765at 862.249 kb on - strand, within BBR_RS13765at 862.322 kb on + strand, within BBR_RS13765at 862.373 kb on + strand, within BBR_RS13765at 862.378 kb on + strand, within BBR_RS13765at 862.381 kb on - strand, within BBR_RS13765at 862.383 kb on + strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.386 kb on - strand, within BBR_RS13765at 862.418 kb on - strand, within BBR_RS13765at 862.425 kb on + strand, within BBR_RS13765at 862.425 kb on + strand, within BBR_RS13765at 862.425 kb on + strand, within BBR_RS13765at 862.468 kb on + strand, within BBR_RS13765at 862.474 kb on + strand, within BBR_RS13765at 862.497 kb on - strand, within BBR_RS13765at 862.507 kb on - strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.597 kb on + strand, within BBR_RS13765at 862.605 kb on - strand, within BBR_RS13765at 862.605 kb on - strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.637 kb on + strand, within BBR_RS13765at 862.645 kb on - strand, within BBR_RS13765at 862.802 kb on + strand, within BBR_RS13765at 862.805 kb on - strand, within BBR_RS13765at 862.810 kb on - strand, within BBR_RS13765at 862.810 kb on - strand, within BBR_RS13765at 862.826 kb on + strand, within BBR_RS13765at 862.847 kb on + strandat 862.853 kb on + strandat 862.853 kb on + strandat 862.874 kb on + strandat 862.899 kb on + strandat 862.925 kb on + strandat 862.925 kb on + strandat 862.945 kb on - strandat 862.947 kb on + strandat 862.947 kb on + strandat 862.947 kb on + strandat 862.955 kb on - strandat 862.978 kb on + strandat 863.010 kb on - strandat 863.043 kb on + strandat 863.060 kb on + strandat 863.117 kb on - strandat 863.147 kb on + strand, within BBR_RS13770at 863.167 kb on - strand, within BBR_RS13770at 863.360 kb on + strand, within BBR_RS13770at 863.373 kb on - strand, within BBR_RS13770at 863.434 kb on - strand, within BBR_RS13770at 863.492 kb on - strand, within BBR_RS13770at 863.616 kb on - strand, within BBR_RS13770at 863.616 kb on - strand, within BBR_RS13770at 863.722 kb on + strandat 864.569 kb on + strandat 864.577 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without LipoicAcid
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862,065 - BBR_RS13765 0.46 -0.5
862,092 + BBR_RS13765 0.48 +0.1
862,114 + BBR_RS13765 0.49 +1.3
862,122 - BBR_RS13765 0.49 -1.2
862,145 - BBR_RS13765 0.51 -1.3
862,161 + BBR_RS13765 0.52 +0.4
862,169 - BBR_RS13765 0.52 -0.8
862,188 - BBR_RS13765 0.53 +0.7
862,198 - BBR_RS13765 0.54 +1.4
862,208 + BBR_RS13765 0.54 +1.7
862,235 - BBR_RS13765 0.56 -0.1
862,235 - BBR_RS13765 0.56 +0.1
862,235 - BBR_RS13765 0.56 -0.3
862,242 - BBR_RS13765 0.56 -1.9
862,249 - BBR_RS13765 0.57 -0.9
862,322 + BBR_RS13765 0.61 +0.4
862,373 + BBR_RS13765 0.64 +0.2
862,378 + BBR_RS13765 0.64 -0.8
862,381 - BBR_RS13765 0.64 -0.2
862,383 + BBR_RS13765 0.64 +0.3
862,386 - BBR_RS13765 0.64 -0.9
862,386 - BBR_RS13765 0.64 +0.1
862,386 - BBR_RS13765 0.64 -1.0
862,386 - BBR_RS13765 0.64 +0.3
862,418 - BBR_RS13765 0.66 -0.2
862,425 + BBR_RS13765 0.66 +1.6
862,425 + BBR_RS13765 0.66 +0.4
862,425 + BBR_RS13765 0.66 +0.9
862,468 + BBR_RS13765 0.69 +0.2
862,474 + BBR_RS13765 0.69 +1.0
862,497 - BBR_RS13765 0.71 -0.7
862,507 - BBR_RS13765 0.71 -0.3
862,597 + BBR_RS13765 0.76 +1.1
862,597 + BBR_RS13765 0.76 +0.8
862,597 + BBR_RS13765 0.76 +0.8
862,597 + BBR_RS13765 0.76 +1.0
862,605 - BBR_RS13765 0.77 -1.3
862,605 - BBR_RS13765 0.77 -0.3
862,637 + BBR_RS13765 0.78 +1.2
862,637 + BBR_RS13765 0.78 +1.6
862,637 + BBR_RS13765 0.78 -0.1
862,637 + BBR_RS13765 0.78 +1.3
862,637 + BBR_RS13765 0.78 +0.8
862,637 + BBR_RS13765 0.78 +0.6
862,637 + BBR_RS13765 0.78 +1.1
862,637 + BBR_RS13765 0.78 -1.0
862,645 - BBR_RS13765 0.79 +0.4
862,802 + BBR_RS13765 0.88 +0.3
862,805 - BBR_RS13765 0.88 -0.6
862,810 - BBR_RS13765 0.88 +0.0
862,810 - BBR_RS13765 0.88 +0.2
862,826 + BBR_RS13765 0.89 -0.5
862,847 + +0.3
862,853 + -2.9
862,853 + +1.0
862,874 + +1.5
862,899 + +0.4
862,925 + +0.6
862,925 + +0.5
862,945 - -0.3
862,947 + +1.0
862,947 + +0.1
862,947 + +1.0
862,955 - +1.8
862,978 + +0.2
863,010 - -0.4
863,043 + +0.7
863,060 + +0.7
863,117 - +1.0
863,147 + BBR_RS13770 0.13 +0.3
863,167 - BBR_RS13770 0.16 -0.9
863,360 + BBR_RS13770 0.43 -0.6
863,373 - BBR_RS13770 0.45 -0.2
863,434 - BBR_RS13770 0.53 -2.2
863,492 - BBR_RS13770 0.61 -1.8
863,616 - BBR_RS13770 0.78 +0.0
863,616 - BBR_RS13770 0.78 -1.4
863,722 + -1.3
864,569 + +0.0
864,577 - -1.5

Or see this region's nucleotide sequence