Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2716

Experiment: perchlorate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2715 and Ac3H11_2716 are separated by 365 nucleotidesAc3H11_2716 and Ac3H11_2717 are separated by 219 nucleotides Ac3H11_2715 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,015,136 to 1,016,935 _2715 Ac3H11_2716 - BarH, at 1,017,301 to 1,018,608 _2716 Ac3H11_2717 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 1,018,828 to 1,019,817 _2717 Position (kb) 1017 1018 1019Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1016.494 kb on - strand, within Ac3H11_2715at 1016.642 kb on + strand, within Ac3H11_2715at 1016.643 kb on - strand, within Ac3H11_2715at 1016.678 kb on + strand, within Ac3H11_2715at 1016.678 kb on + strand, within Ac3H11_2715at 1016.679 kb on - strand, within Ac3H11_2715at 1016.679 kb on - strand, within Ac3H11_2715at 1016.933 kb on + strandat 1017.000 kb on - strandat 1017.056 kb on - strandat 1017.153 kb on + strandat 1017.159 kb on + strandat 1017.160 kb on - strandat 1017.178 kb on + strandat 1017.178 kb on + strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.179 kb on - strandat 1017.215 kb on + strandat 1017.229 kb on + strandat 1017.242 kb on + strandat 1017.242 kb on + strandat 1017.375 kb on + strandat 1017.388 kb on + strandat 1017.464 kb on - strand, within Ac3H11_2716at 1017.464 kb on - strand, within Ac3H11_2716at 1017.505 kb on + strand, within Ac3H11_2716at 1017.505 kb on + strand, within Ac3H11_2716at 1017.505 kb on + strand, within Ac3H11_2716at 1017.652 kb on + strand, within Ac3H11_2716at 1017.652 kb on + strand, within Ac3H11_2716at 1017.691 kb on + strand, within Ac3H11_2716at 1017.692 kb on - strand, within Ac3H11_2716at 1017.880 kb on + strand, within Ac3H11_2716at 1018.077 kb on + strand, within Ac3H11_2716at 1018.078 kb on - strand, within Ac3H11_2716at 1018.115 kb on - strand, within Ac3H11_2716at 1018.606 kb on + strandat 1018.670 kb on - strandat 1018.847 kb on - strandat 1018.847 kb on - strandat 1018.880 kb on - strandat 1018.996 kb on + strand, within Ac3H11_2717at 1018.997 kb on - strand, within Ac3H11_2717at 1018.997 kb on - strand, within Ac3H11_2717at 1018.997 kb on - strand, within Ac3H11_2717at 1019.026 kb on + strand, within Ac3H11_2717at 1019.027 kb on - strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.173 kb on + strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.174 kb on - strand, within Ac3H11_2717at 1019.206 kb on - strand, within Ac3H11_2717at 1019.327 kb on - strand, within Ac3H11_2717

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Per-strain Table

Position Strand Gene LocusTag Fraction perchlorate 10 mM
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1,016,494 - Ac3H11_2715 0.75 -2.4
1,016,642 + Ac3H11_2715 0.84 -1.9
1,016,643 - Ac3H11_2715 0.84 -0.5
1,016,678 + Ac3H11_2715 0.86 +0.9
1,016,678 + Ac3H11_2715 0.86 -1.1
1,016,679 - Ac3H11_2715 0.86 +0.8
1,016,679 - Ac3H11_2715 0.86 -1.2
1,016,933 + -2.5
1,017,000 - +2.0
1,017,056 - +1.1
1,017,153 + -1.8
1,017,159 + -0.5
1,017,160 - -0.0
1,017,178 + -1.8
1,017,178 + -0.1
1,017,179 - -0.1
1,017,179 - +0.2
1,017,179 - +0.1
1,017,179 - -0.7
1,017,179 - -0.9
1,017,179 - +0.4
1,017,179 - +0.2
1,017,179 - -0.1
1,017,179 - +0.0
1,017,215 + -1.2
1,017,229 + +0.7
1,017,242 + -2.6
1,017,242 + +1.9
1,017,375 + +1.2
1,017,388 + -0.6
1,017,464 - Ac3H11_2716 0.12 +0.8
1,017,464 - Ac3H11_2716 0.12 -0.8
1,017,505 + Ac3H11_2716 0.16 -1.0
1,017,505 + Ac3H11_2716 0.16 -1.5
1,017,505 + Ac3H11_2716 0.16 -0.9
1,017,652 + Ac3H11_2716 0.27 -2.7
1,017,652 + Ac3H11_2716 0.27 -1.6
1,017,691 + Ac3H11_2716 0.30 -1.4
1,017,692 - Ac3H11_2716 0.30 +0.8
1,017,880 + Ac3H11_2716 0.44 +0.6
1,018,077 + Ac3H11_2716 0.59 -0.2
1,018,078 - Ac3H11_2716 0.59 -2.5
1,018,115 - Ac3H11_2716 0.62 -0.6
1,018,606 + +0.3
1,018,670 - -0.0
1,018,847 - +0.3
1,018,847 - +0.8
1,018,880 - -0.8
1,018,996 + Ac3H11_2717 0.17 -0.2
1,018,997 - Ac3H11_2717 0.17 +0.7
1,018,997 - Ac3H11_2717 0.17 +1.6
1,018,997 - Ac3H11_2717 0.17 -1.7
1,019,026 + Ac3H11_2717 0.20 -0.9
1,019,027 - Ac3H11_2717 0.20 +0.2
1,019,173 + Ac3H11_2717 0.35 +0.1
1,019,173 + Ac3H11_2717 0.35 -1.2
1,019,173 + Ac3H11_2717 0.35 +0.9
1,019,173 + Ac3H11_2717 0.35 +1.4
1,019,173 + Ac3H11_2717 0.35 +0.1
1,019,173 + Ac3H11_2717 0.35 -0.3
1,019,174 - Ac3H11_2717 0.35 -0.4
1,019,174 - Ac3H11_2717 0.35 +1.6
1,019,174 - Ac3H11_2717 0.35 +1.0
1,019,174 - Ac3H11_2717 0.35 +0.4
1,019,174 - Ac3H11_2717 0.35 -0.6
1,019,206 - Ac3H11_2717 0.38 -0.1
1,019,327 - Ac3H11_2717 0.50 +3.0

Or see this region's nucleotide sequence