Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16545

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_16540 and AO353_16545 are separated by 202 nucleotidesAO353_16545 and AO353_16550 are separated by 274 nucleotides AO353_16540: AO353_16540 - acetyl-CoA carboxylase subunit alpha, at 3,674,180 to 3,675,127 _16540 AO353_16545: AO353_16545 - tRNA(Ile)-lysidine synthetase, at 3,675,330 to 3,676,643 _16545 AO353_16550: AO353_16550 - CTP synthase, at 3,676,918 to 3,678,549 _16550 Position (kb) 3675 3676 3677Strain fitness (log2 ratio) -2 -1 0 1 2at 3675.116 kb on + strandat 3675.116 kb on + strandat 3675.116 kb on + strandat 3675.145 kb on + strandat 3675.145 kb on + strandat 3675.146 kb on - strandat 3675.190 kb on + strandat 3675.197 kb on + strandat 3675.197 kb on + strandat 3675.197 kb on + strandat 3675.198 kb on - strandat 3675.207 kb on + strandat 3675.207 kb on + strandat 3675.207 kb on + strandat 3675.208 kb on - strandat 3675.311 kb on + strandat 3675.312 kb on - strandat 3676.721 kb on + strandat 3676.759 kb on + strandat 3676.771 kb on + strandat 3676.830 kb on + strandat 3676.834 kb on + strandat 3676.907 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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3,675,116 + +1.0
3,675,116 + -0.0
3,675,116 + -1.4
3,675,145 + +0.8
3,675,145 + -1.0
3,675,146 - -1.6
3,675,190 + +0.6
3,675,197 + +0.6
3,675,197 + -2.1
3,675,197 + +1.0
3,675,198 - -0.4
3,675,207 + +1.2
3,675,207 + +0.1
3,675,207 + +0.8
3,675,208 - +2.0
3,675,311 + +1.4
3,675,312 - -1.0
3,676,721 + +0.2
3,676,759 + +0.6
3,676,771 + -1.4
3,676,830 + -0.2
3,676,834 + -0.8
3,676,907 + -1.0

Or see this region's nucleotide sequence