Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00870

Experiment: Tween 20 (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_00865 and AO353_00870 overlap by 42 nucleotidesAO353_00870 and AO353_00875 are separated by 14 nucleotidesAO353_00875 and AO353_00880 are separated by 20 nucleotides AO353_00865: AO353_00865 - phosphoenolpyruvate synthase, at 195,134 to 197,509 _00865 AO353_00870: AO353_00870 - hypothetical protein, at 197,468 to 197,671 _00870 AO353_00875: AO353_00875 - transcriptional regulator, at 197,686 to 198,504 _00875 AO353_00880: AO353_00880 - 2-methylcitrate dehydratase, at 198,525 to 200,009 _00880 Position (kb) 197 198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.470 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.533 kb on + strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.534 kb on - strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.587 kb on + strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.588 kb on - strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.719 kb on + strand, within AO353_00865at 196.800 kb on + strand, within AO353_00865at 196.801 kb on - strand, within AO353_00865at 196.829 kb on + strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.830 kb on - strand, within AO353_00865at 196.864 kb on + strand, within AO353_00865at 196.911 kb on - strand, within AO353_00865at 196.949 kb on + strand, within AO353_00865at 196.949 kb on + strand, within AO353_00865at 196.975 kb on + strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 196.976 kb on - strand, within AO353_00865at 197.002 kb on - strand, within AO353_00865at 197.036 kb on + strand, within AO353_00865at 197.036 kb on + strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.037 kb on - strand, within AO353_00865at 197.339 kb on + strandat 197.340 kb on - strandat 197.358 kb on + strandat 197.416 kb on + strandat 197.417 kb on - strandat 197.417 kb on - strandat 197.417 kb on - strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.462 kb on + strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.463 kb on - strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.495 kb on + strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.496 kb on - strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.499 kb on + strandat 197.500 kb on - strandat 197.500 kb on - strandat 197.504 kb on + strandat 197.504 kb on + strandat 197.504 kb on + strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.505 kb on - strandat 197.525 kb on - strand, within AO353_00870at 197.581 kb on + strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.582 kb on - strand, within AO353_00870at 197.601 kb on + strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.602 kb on - strand, within AO353_00870at 197.642 kb on + strand, within AO353_00870at 197.642 kb on + strandat 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.643 kb on - strand, within AO353_00870at 197.648 kb on - strand, within AO353_00870at 197.669 kb on + strandat 197.707 kb on - strandat 197.707 kb on - strandat 197.727 kb on + strandat 197.728 kb on - strandat 197.728 kb on - strandat 197.775 kb on + strand, within AO353_00875at 197.792 kb on + strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.793 kb on - strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.800 kb on + strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.801 kb on - strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.834 kb on + strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.835 kb on - strand, within AO353_00875at 197.907 kb on + strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 197.908 kb on - strand, within AO353_00875at 198.004 kb on + strand, within AO353_00875at 198.005 kb on - strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.046 kb on + strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.047 kb on - strand, within AO353_00875at 198.109 kb on + strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.110 kb on - strand, within AO353_00875at 198.112 kb on + strand, within AO353_00875at 198.113 kb on - strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.175 kb on + strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.176 kb on - strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.358 kb on + strand, within AO353_00875at 198.359 kb on - strand, within AO353_00875at 198.502 kb on + strandat 198.502 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
remove
196,470 + AO353_00865 0.56 -0.7
196,533 + AO353_00865 0.59 -1.5
196,533 + AO353_00865 0.59 -0.7
196,533 + AO353_00865 0.59 -1.2
196,533 + AO353_00865 0.59 -2.3
196,533 + AO353_00865 0.59 -0.7
196,534 - AO353_00865 0.59 -0.1
196,534 - AO353_00865 0.59 -0.3
196,534 - AO353_00865 0.59 -1.3
196,534 - AO353_00865 0.59 -1.5
196,534 - AO353_00865 0.59 -0.8
196,534 - AO353_00865 0.59 -2.4
196,534 - AO353_00865 0.59 +1.3
196,587 + AO353_00865 0.61 -0.3
196,587 + AO353_00865 0.61 -2.1
196,587 + AO353_00865 0.61 -2.2
196,587 + AO353_00865 0.61 -1.1
196,587 + AO353_00865 0.61 -1.9
196,587 + AO353_00865 0.61 -2.3
196,587 + AO353_00865 0.61 +1.3
196,588 - AO353_00865 0.61 -1.1
196,588 - AO353_00865 0.61 -1.3
196,588 - AO353_00865 0.61 -1.1
196,588 - AO353_00865 0.61 -0.3
196,588 - AO353_00865 0.61 -2.5
196,588 - AO353_00865 0.61 -1.1
196,719 + AO353_00865 0.67 -3.0
196,719 + AO353_00865 0.67 -2.1
196,719 + AO353_00865 0.67 -2.1
196,800 + AO353_00865 0.70 -0.7
196,801 - AO353_00865 0.70 -1.4
196,829 + AO353_00865 0.71 -1.9
196,830 - AO353_00865 0.71 -2.5
196,830 - AO353_00865 0.71 -1.1
196,830 - AO353_00865 0.71 -1.5
196,864 + AO353_00865 0.73 -3.3
196,911 - AO353_00865 0.75 -1.2
196,949 + AO353_00865 0.76 -1.9
196,949 + AO353_00865 0.76 -1.2
196,975 + AO353_00865 0.77 -2.8
196,976 - AO353_00865 0.78 -1.1
196,976 - AO353_00865 0.78 -1.7
196,976 - AO353_00865 0.78 -1.9
197,002 - AO353_00865 0.79 +0.3
197,036 + AO353_00865 0.80 -1.3
197,036 + AO353_00865 0.80 -1.5
197,037 - AO353_00865 0.80 -1.9
197,037 - AO353_00865 0.80 -0.5
197,037 - AO353_00865 0.80 -0.7
197,037 - AO353_00865 0.80 -2.1
197,037 - AO353_00865 0.80 -1.5
197,339 + -1.9
197,340 - -0.7
197,358 + +2.3
197,416 + -2.2
197,417 - -2.2
197,417 - -0.8
197,417 - +1.7
197,462 + -1.3
197,462 + -0.3
197,462 + -2.1
197,462 + -0.9
197,462 + -2.4
197,462 + -2.4
197,462 + -1.1
197,462 + -2.0
197,462 + -0.3
197,463 - -1.7
197,463 - +0.3
197,463 - -1.1
197,463 - -2.3
197,463 - -2.2
197,463 - -2.9
197,463 - -0.7
197,463 - -2.4
197,463 - -2.6
197,463 - +0.3
197,463 - -1.1
197,463 - -2.1
197,495 + -1.1
197,495 + -1.8
197,495 + -1.5
197,495 + -2.3
197,495 + -1.5
197,495 + -2.2
197,495 + -3.0
197,495 + -0.7
197,495 + -1.1
197,495 + +0.0
197,495 + -1.5
197,495 + -1.3
197,496 - -3.0
197,496 - -2.2
197,496 - -0.5
197,496 - -2.2
197,496 - -2.2
197,496 - -0.1
197,496 - -1.7
197,496 - -1.7
197,499 + -1.4
197,499 + -1.3
197,499 + -0.5
197,499 + +1.3
197,499 + -0.7
197,499 + -0.6
197,500 - -2.1
197,500 - -1.7
197,504 + -1.3
197,504 + +1.3
197,504 + -3.4
197,505 - -0.3
197,505 - -1.1
197,505 - -0.7
197,505 - -3.4
197,505 - -2.1
197,505 - -2.3
197,525 - AO353_00870 0.28 -0.8
197,581 + AO353_00870 0.55 -1.3
197,582 - AO353_00870 0.56 +1.3
197,582 - AO353_00870 0.56 -2.5
197,601 + AO353_00870 0.65 -0.7
197,602 - AO353_00870 0.66 -0.5
197,602 - AO353_00870 0.66 -0.7
197,642 + AO353_00870 0.85 -1.4
197,642 + -0.3
197,643 - AO353_00870 0.86 -1.1
197,643 - AO353_00870 0.86 -0.6
197,643 - AO353_00870 0.86 +0.6
197,648 - AO353_00870 0.88 +0.3
197,669 + -0.3
197,707 - -0.1
197,707 - -1.1
197,727 + -2.6
197,728 - -0.5
197,728 - +0.3
197,775 + AO353_00875 0.11 +0.1
197,792 + AO353_00875 0.13 +0.7
197,793 - AO353_00875 0.13 +0.7
197,793 - AO353_00875 0.13 +0.3
197,793 - AO353_00875 0.13 -0.5
197,800 + AO353_00875 0.14 -2.6
197,800 + AO353_00875 0.14 -0.7
197,801 - AO353_00875 0.14 +1.1
197,801 - AO353_00875 0.14 -1.8
197,834 + AO353_00875 0.18 -1.1
197,834 + AO353_00875 0.18 -1.3
197,834 + AO353_00875 0.18 -2.1
197,834 + AO353_00875 0.18 -2.3
197,834 + AO353_00875 0.18 -1.1
197,834 + AO353_00875 0.18 -2.7
197,834 + AO353_00875 0.18 -1.9
197,835 - AO353_00875 0.18 +0.3
197,835 - AO353_00875 0.18 +0.7
197,835 - AO353_00875 0.18 -0.4
197,835 - AO353_00875 0.18 +0.2
197,907 + AO353_00875 0.27 -0.6
197,908 - AO353_00875 0.27 -0.5
197,908 - AO353_00875 0.27 -1.1
198,004 + AO353_00875 0.39 -2.1
198,005 - AO353_00875 0.39 +0.0
198,046 + AO353_00875 0.44 -2.4
198,046 + AO353_00875 0.44 -1.1
198,046 + AO353_00875 0.44 -0.7
198,046 + AO353_00875 0.44 +1.0
198,046 + AO353_00875 0.44 -1.3
198,046 + AO353_00875 0.44 -1.5
198,046 + AO353_00875 0.44 -2.3
198,046 + AO353_00875 0.44 -0.1
198,046 + AO353_00875 0.44 -1.1
198,046 + AO353_00875 0.44 +0.1
198,047 - AO353_00875 0.44 -1.8
198,047 - AO353_00875 0.44 -3.1
198,047 - AO353_00875 0.44 -0.7
198,047 - AO353_00875 0.44 -0.6
198,047 - AO353_00875 0.44 -0.5
198,047 - AO353_00875 0.44 +0.3
198,109 + AO353_00875 0.52 -0.8
198,110 - AO353_00875 0.52 -0.6
198,110 - AO353_00875 0.52 -0.7
198,112 + AO353_00875 0.52 -0.7
198,113 - AO353_00875 0.52 -0.1
198,175 + AO353_00875 0.60 +0.5
198,175 + AO353_00875 0.60 +1.3
198,175 + AO353_00875 0.60 -1.5
198,175 + AO353_00875 0.60 +1.3
198,176 - AO353_00875 0.60 -0.2
198,176 - AO353_00875 0.60 +0.0
198,358 + AO353_00875 0.82 +1.3
198,358 + AO353_00875 0.82 -0.0
198,359 - AO353_00875 0.82 -0.3
198,502 + -0.1
198,502 + +0.0

Or see this region's nucleotide sequence