Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3157

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3156 and Shewana3_3157 are separated by 152 nucleotidesShewana3_3157 and Shewana3_3158 are separated by 50 nucleotidesShewana3_3158 and Shewana3_3159 are separated by 156 nucleotides Shewana3_3156: Shewana3_3156 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 3,785,115 to 3,786,212 _3156 Shewana3_3157: Shewana3_3157 - diguanylate cyclase with GAF sensor (RefSeq), at 3,786,365 to 3,787,627 _3157 Shewana3_3158: Shewana3_3158 - hypothetical protein (RefSeq), at 3,787,678 to 3,788,295 _3158 Shewana3_3159: Shewana3_3159 - hypothetical protein (RefSeq), at 3,788,452 to 3,788,913 _3159 Position (kb) 3786 3787 3788Strain fitness (log2 ratio) -2 -1 0 1at 3785.677 kb on + strand, within Shewana3_3156at 3785.797 kb on - strand, within Shewana3_3156at 3785.880 kb on - strand, within Shewana3_3156at 3786.019 kb on + strand, within Shewana3_3156at 3786.019 kb on + strand, within Shewana3_3156at 3786.027 kb on - strand, within Shewana3_3156at 3786.027 kb on - strand, within Shewana3_3156at 3786.601 kb on - strand, within Shewana3_3157at 3786.694 kb on - strand, within Shewana3_3157at 3786.699 kb on - strand, within Shewana3_3157at 3786.756 kb on + strand, within Shewana3_3157at 3786.756 kb on + strand, within Shewana3_3157at 3786.764 kb on - strand, within Shewana3_3157at 3786.924 kb on - strand, within Shewana3_3157at 3786.969 kb on + strand, within Shewana3_3157at 3787.093 kb on + strand, within Shewana3_3157at 3787.404 kb on + strand, within Shewana3_3157at 3787.655 kb on - strandat 3787.738 kb on - strandat 3787.748 kb on - strand, within Shewana3_3158at 3788.000 kb on + strand, within Shewana3_3158at 3788.008 kb on - strand, within Shewana3_3158at 3788.008 kb on - strand, within Shewana3_3158at 3788.010 kb on + strand, within Shewana3_3158at 3788.018 kb on - strand, within Shewana3_3158at 3788.081 kb on + strand, within Shewana3_3158at 3788.089 kb on - strand, within Shewana3_3158at 3788.342 kb on + strandat 3788.342 kb on + strandat 3788.342 kb on + strandat 3788.350 kb on - strandat 3788.350 kb on - strandat 3788.350 kb on - strandat 3788.350 kb on - strandat 3788.356 kb on - strandat 3788.545 kb on + strand, within Shewana3_3159

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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3,785,677 + Shewana3_3156 0.51 -0.9
3,785,797 - Shewana3_3156 0.62 -0.8
3,785,880 - Shewana3_3156 0.70 -1.5
3,786,019 + Shewana3_3156 0.82 -0.5
3,786,019 + Shewana3_3156 0.82 -0.8
3,786,027 - Shewana3_3156 0.83 -0.9
3,786,027 - Shewana3_3156 0.83 -2.5
3,786,601 - Shewana3_3157 0.19 -0.5
3,786,694 - Shewana3_3157 0.26 -0.6
3,786,699 - Shewana3_3157 0.26 +0.6
3,786,756 + Shewana3_3157 0.31 -0.5
3,786,756 + Shewana3_3157 0.31 -0.3
3,786,764 - Shewana3_3157 0.32 -0.8
3,786,924 - Shewana3_3157 0.44 -2.2
3,786,969 + Shewana3_3157 0.48 -1.4
3,787,093 + Shewana3_3157 0.58 +0.3
3,787,404 + Shewana3_3157 0.82 -0.7
3,787,655 - +0.9
3,787,738 - -0.3
3,787,748 - Shewana3_3158 0.11 +0.9
3,788,000 + Shewana3_3158 0.52 -0.6
3,788,008 - Shewana3_3158 0.53 -0.3
3,788,008 - Shewana3_3158 0.53 -0.4
3,788,010 + Shewana3_3158 0.54 +0.4
3,788,018 - Shewana3_3158 0.55 -0.6
3,788,081 + Shewana3_3158 0.65 +0.4
3,788,089 - Shewana3_3158 0.67 +0.4
3,788,342 + -0.3
3,788,342 + +0.4
3,788,342 + -0.4
3,788,350 - +0.6
3,788,350 - -0.3
3,788,350 - -0.7
3,788,350 - +0.4
3,788,356 - +0.4
3,788,545 + Shewana3_3159 0.20 -1.0

Or see this region's nucleotide sequence