Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2696

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2694 and Shewana3_2695 overlap by 4 nucleotidesShewana3_2695 and Shewana3_2696 overlap by 11 nucleotidesShewana3_2696 and Shewana3_2697 are separated by 121 nucleotides Shewana3_2694: Shewana3_2694 - AzlC family protein (RefSeq), at 3,220,649 to 3,221,416 _2694 Shewana3_2695: Shewana3_2695 - branched-chain amino acid transport (RefSeq), at 3,221,413 to 3,221,715 _2695 Shewana3_2696: Shewana3_2696 - major facilitator transporter (RefSeq), at 3,221,705 to 3,223,063 _2696 Shewana3_2697: Shewana3_2697 - N-acetylglucosamine 6-phosphate deacetylase (RefSeq), at 3,223,185 to 3,224,369 _2697 Position (kb) 3221 3222 3223 3224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3220.747 kb on + strand, within Shewana3_2694at 3220.936 kb on + strand, within Shewana3_2694at 3221.044 kb on + strand, within Shewana3_2694at 3221.078 kb on + strand, within Shewana3_2694at 3221.079 kb on - strand, within Shewana3_2694at 3221.106 kb on + strand, within Shewana3_2694at 3221.106 kb on + strand, within Shewana3_2694at 3221.284 kb on - strand, within Shewana3_2694at 3221.340 kb on + strandat 3221.355 kb on - strandat 3221.367 kb on - strandat 3221.680 kb on + strand, within Shewana3_2695at 3221.734 kb on - strandat 3221.743 kb on - strandat 3221.855 kb on - strand, within Shewana3_2696at 3221.918 kb on - strand, within Shewana3_2696at 3221.929 kb on + strand, within Shewana3_2696at 3221.937 kb on - strand, within Shewana3_2696at 3221.942 kb on + strand, within Shewana3_2696at 3222.127 kb on - strand, within Shewana3_2696at 3222.171 kb on + strand, within Shewana3_2696at 3222.198 kb on - strand, within Shewana3_2696at 3222.250 kb on + strand, within Shewana3_2696at 3222.282 kb on - strand, within Shewana3_2696at 3222.660 kb on + strand, within Shewana3_2696at 3222.660 kb on + strand, within Shewana3_2696at 3222.697 kb on - strand, within Shewana3_2696at 3223.192 kb on + strandat 3223.215 kb on - strandat 3223.215 kb on - strandat 3223.249 kb on - strandat 3223.352 kb on + strand, within Shewana3_2697at 3223.375 kb on - strand, within Shewana3_2697at 3223.745 kb on - strand, within Shewana3_2697at 3223.814 kb on + strand, within Shewana3_2697at 3223.883 kb on - strand, within Shewana3_2697

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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3,220,747 + Shewana3_2694 0.13 +0.2
3,220,936 + Shewana3_2694 0.37 -1.3
3,221,044 + Shewana3_2694 0.51 +0.1
3,221,078 + Shewana3_2694 0.56 -1.1
3,221,079 - Shewana3_2694 0.56 +0.5
3,221,106 + Shewana3_2694 0.60 -1.4
3,221,106 + Shewana3_2694 0.60 +1.0
3,221,284 - Shewana3_2694 0.83 -2.1
3,221,340 + -0.1
3,221,355 - -0.8
3,221,367 - -0.4
3,221,680 + Shewana3_2695 0.88 -0.9
3,221,734 - -0.7
3,221,743 - -0.9
3,221,855 - Shewana3_2696 0.11 +0.4
3,221,918 - Shewana3_2696 0.16 -0.3
3,221,929 + Shewana3_2696 0.16 -0.6
3,221,937 - Shewana3_2696 0.17 -2.2
3,221,942 + Shewana3_2696 0.17 +1.0
3,222,127 - Shewana3_2696 0.31 +0.7
3,222,171 + Shewana3_2696 0.34 +1.0
3,222,198 - Shewana3_2696 0.36 -0.2
3,222,250 + Shewana3_2696 0.40 +1.2
3,222,282 - Shewana3_2696 0.42 +0.3
3,222,660 + Shewana3_2696 0.70 -0.0
3,222,660 + Shewana3_2696 0.70 -0.6
3,222,697 - Shewana3_2696 0.73 +0.6
3,223,192 + -3.9
3,223,215 - +0.4
3,223,215 - -0.0
3,223,249 - -1.6
3,223,352 + Shewana3_2697 0.14 +0.5
3,223,375 - Shewana3_2697 0.16 +0.0
3,223,745 - Shewana3_2697 0.47 +0.5
3,223,814 + Shewana3_2697 0.53 -0.4
3,223,883 - Shewana3_2697 0.59 +0.6

Or see this region's nucleotide sequence