Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2576 and Shewana3_2577 are separated by 350 nucleotides Shewana3_2577 and Shewana3_2578 are separated by 230 nucleotides Shewana3_2578 and Shewana3_2579 are separated by 233 nucleotides Shewana3_2579 and Shewana3_2580 are separated by 58 nucleotides
Shewana3_2576: Shewana3_2576 - hypothetical protein (RefSeq), at 3,079,270 to 3,079,974
_2576
Shewana3_2577: Shewana3_2577 - glyoxalase family protein (RefSeq), at 3,080,325 to 3,080,705
_2577
Shewana3_2578: Shewana3_2578 - hypothetical protein (RefSeq), at 3,080,936 to 3,084,166
_2578
Shewana3_2579: Shewana3_2579 - glutaredoxin (RefSeq), at 3,084,400 to 3,084,756
_2579
Shewana3_2580: Shewana3_2580 - hypothetical protein (RefSeq), at 3,084,815 to 3,085,504
_2580
Position (kb)
3080
3081
3082
3083
3084
3085 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3079.964 kb on + strand at 3079.985 kb on + strand at 3080.019 kb on + strand at 3080.138 kb on - strand at 3080.761 kb on - strand at 3081.063 kb on - strand at 3081.613 kb on + strand, within Shewana3_2578 at 3081.613 kb on + strand, within Shewana3_2578 at 3081.621 kb on - strand, within Shewana3_2578 at 3081.988 kb on - strand, within Shewana3_2578 at 3082.062 kb on + strand, within Shewana3_2578 at 3082.062 kb on + strand, within Shewana3_2578 at 3082.069 kb on + strand, within Shewana3_2578 at 3082.514 kb on + strand, within Shewana3_2578 at 3082.794 kb on - strand, within Shewana3_2578 at 3082.816 kb on + strand, within Shewana3_2578 at 3083.161 kb on + strand, within Shewana3_2578 at 3083.167 kb on + strand, within Shewana3_2578 at 3083.366 kb on + strand, within Shewana3_2578 at 3083.464 kb on - strand, within Shewana3_2578 at 3083.480 kb on - strand, within Shewana3_2578 at 3083.480 kb on - strand, within Shewana3_2578 at 3083.501 kb on + strand, within Shewana3_2578 at 3083.509 kb on - strand, within Shewana3_2578 at 3083.619 kb on + strand, within Shewana3_2578 at 3083.619 kb on + strand, within Shewana3_2578 at 3083.766 kb on - strand, within Shewana3_2578 at 3083.848 kb on + strand at 3083.937 kb on + strand at 3083.979 kb on - strand at 3084.039 kb on - strand at 3084.274 kb on + strand at 3084.282 kb on + strand at 3084.288 kb on - strand at 3084.288 kb on - strand at 3084.458 kb on + strand, within Shewana3_2579 at 3084.466 kb on - strand, within Shewana3_2579 at 3084.554 kb on + strand, within Shewana3_2579 at 3084.562 kb on - strand, within Shewana3_2579 at 3084.643 kb on + strand, within Shewana3_2579 at 3085.116 kb on + strand, within Shewana3_2580
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 3,079,964 + -0.8 3,079,985 + -1.4 3,080,019 + -2.3 3,080,138 - +0.5 3,080,761 - -0.1 3,081,063 - -1.6 3,081,613 + Shewana3_2578 0.21 +1.1 3,081,613 + Shewana3_2578 0.21 +0.5 3,081,621 - Shewana3_2578 0.21 +0.3 3,081,988 - Shewana3_2578 0.33 +1.9 3,082,062 + Shewana3_2578 0.35 +0.6 3,082,062 + Shewana3_2578 0.35 -0.6 3,082,069 + Shewana3_2578 0.35 -0.4 3,082,514 + Shewana3_2578 0.49 -2.4 3,082,794 - Shewana3_2578 0.58 -1.9 3,082,816 + Shewana3_2578 0.58 -2.1 3,083,161 + Shewana3_2578 0.69 -1.2 3,083,167 + Shewana3_2578 0.69 -1.8 3,083,366 + Shewana3_2578 0.75 -0.5 3,083,464 - Shewana3_2578 0.78 -0.0 3,083,480 - Shewana3_2578 0.79 -2.5 3,083,480 - Shewana3_2578 0.79 +1.6 3,083,501 + Shewana3_2578 0.79 -2.7 3,083,509 - Shewana3_2578 0.80 +0.6 3,083,619 + Shewana3_2578 0.83 -0.6 3,083,619 + Shewana3_2578 0.83 -0.6 3,083,766 - Shewana3_2578 0.88 +0.6 3,083,848 + +1.0 3,083,937 + -0.5 3,083,979 - +1.2 3,084,039 - +0.6 3,084,274 + -0.8 3,084,282 + -0.5 3,084,288 - -1.0 3,084,288 - +0.2 3,084,458 + Shewana3_2579 0.16 +0.2 3,084,466 - Shewana3_2579 0.18 -1.4 3,084,554 + Shewana3_2579 0.43 +0.4 3,084,562 - Shewana3_2579 0.45 -2.0 3,084,643 + Shewana3_2579 0.68 +0.2 3,085,116 + Shewana3_2580 0.44 -1.9
Or see this region's nucleotide sequence