Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2578

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2576 and Shewana3_2577 are separated by 350 nucleotidesShewana3_2577 and Shewana3_2578 are separated by 230 nucleotidesShewana3_2578 and Shewana3_2579 are separated by 233 nucleotidesShewana3_2579 and Shewana3_2580 are separated by 58 nucleotides Shewana3_2576: Shewana3_2576 - hypothetical protein (RefSeq), at 3,079,270 to 3,079,974 _2576 Shewana3_2577: Shewana3_2577 - glyoxalase family protein (RefSeq), at 3,080,325 to 3,080,705 _2577 Shewana3_2578: Shewana3_2578 - hypothetical protein (RefSeq), at 3,080,936 to 3,084,166 _2578 Shewana3_2579: Shewana3_2579 - glutaredoxin (RefSeq), at 3,084,400 to 3,084,756 _2579 Shewana3_2580: Shewana3_2580 - hypothetical protein (RefSeq), at 3,084,815 to 3,085,504 _2580 Position (kb) 3080 3081 3082 3083 3084 3085Strain fitness (log2 ratio) -2 -1 0 1 2at 3079.964 kb on + strandat 3079.985 kb on + strandat 3080.019 kb on + strandat 3080.138 kb on - strandat 3080.761 kb on - strandat 3081.063 kb on - strandat 3081.613 kb on + strand, within Shewana3_2578at 3081.613 kb on + strand, within Shewana3_2578at 3081.621 kb on - strand, within Shewana3_2578at 3081.988 kb on - strand, within Shewana3_2578at 3082.062 kb on + strand, within Shewana3_2578at 3082.062 kb on + strand, within Shewana3_2578at 3082.069 kb on + strand, within Shewana3_2578at 3082.514 kb on + strand, within Shewana3_2578at 3082.794 kb on - strand, within Shewana3_2578at 3082.816 kb on + strand, within Shewana3_2578at 3083.161 kb on + strand, within Shewana3_2578at 3083.167 kb on + strand, within Shewana3_2578at 3083.366 kb on + strand, within Shewana3_2578at 3083.464 kb on - strand, within Shewana3_2578at 3083.480 kb on - strand, within Shewana3_2578at 3083.480 kb on - strand, within Shewana3_2578at 3083.501 kb on + strand, within Shewana3_2578at 3083.509 kb on - strand, within Shewana3_2578at 3083.619 kb on + strand, within Shewana3_2578at 3083.619 kb on + strand, within Shewana3_2578at 3083.766 kb on - strand, within Shewana3_2578at 3083.848 kb on + strandat 3083.937 kb on + strandat 3083.979 kb on - strandat 3084.039 kb on - strandat 3084.274 kb on + strandat 3084.282 kb on + strandat 3084.288 kb on - strandat 3084.288 kb on - strandat 3084.458 kb on + strand, within Shewana3_2579at 3084.466 kb on - strand, within Shewana3_2579at 3084.554 kb on + strand, within Shewana3_2579at 3084.562 kb on - strand, within Shewana3_2579at 3084.643 kb on + strand, within Shewana3_2579at 3085.116 kb on + strand, within Shewana3_2580

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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3,079,964 + -0.8
3,079,985 + -1.4
3,080,019 + -2.3
3,080,138 - +0.5
3,080,761 - -0.1
3,081,063 - -1.6
3,081,613 + Shewana3_2578 0.21 +1.1
3,081,613 + Shewana3_2578 0.21 +0.5
3,081,621 - Shewana3_2578 0.21 +0.3
3,081,988 - Shewana3_2578 0.33 +1.9
3,082,062 + Shewana3_2578 0.35 +0.6
3,082,062 + Shewana3_2578 0.35 -0.6
3,082,069 + Shewana3_2578 0.35 -0.4
3,082,514 + Shewana3_2578 0.49 -2.4
3,082,794 - Shewana3_2578 0.58 -1.9
3,082,816 + Shewana3_2578 0.58 -2.1
3,083,161 + Shewana3_2578 0.69 -1.2
3,083,167 + Shewana3_2578 0.69 -1.8
3,083,366 + Shewana3_2578 0.75 -0.5
3,083,464 - Shewana3_2578 0.78 -0.0
3,083,480 - Shewana3_2578 0.79 -2.5
3,083,480 - Shewana3_2578 0.79 +1.6
3,083,501 + Shewana3_2578 0.79 -2.7
3,083,509 - Shewana3_2578 0.80 +0.6
3,083,619 + Shewana3_2578 0.83 -0.6
3,083,619 + Shewana3_2578 0.83 -0.6
3,083,766 - Shewana3_2578 0.88 +0.6
3,083,848 + +1.0
3,083,937 + -0.5
3,083,979 - +1.2
3,084,039 - +0.6
3,084,274 + -0.8
3,084,282 + -0.5
3,084,288 - -1.0
3,084,288 - +0.2
3,084,458 + Shewana3_2579 0.16 +0.2
3,084,466 - Shewana3_2579 0.18 -1.4
3,084,554 + Shewana3_2579 0.43 +0.4
3,084,562 - Shewana3_2579 0.45 -2.0
3,084,643 + Shewana3_2579 0.68 +0.2
3,085,116 + Shewana3_2580 0.44 -1.9

Or see this region's nucleotide sequence