Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2523 and Shewana3_2524 are separated by 226 nucleotides Shewana3_2524 and grxA are separated by 60 nucleotides grxA and Shewana3_2526 are separated by 58 nucleotides
Shewana3_2523: Shewana3_2523 - acetyl-CoA synthetase (RefSeq), at 3,019,358 to 3,021,310
_2523
Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309
_2524
Shewana3_2525: grxA - glutaredoxin 1 (RefSeq), at 3,023,370 to 3,023,630
grxA
Shewana3_2526: Shewana3_2526 - hypothetical protein (RefSeq), at 3,023,689 to 3,024,852
_2526
Position (kb)
3021
3022
3023
3024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3020.738 kb on - strand, within Shewana3_2523 at 3020.838 kb on + strand, within Shewana3_2523 at 3021.004 kb on - strand, within Shewana3_2523 at 3021.060 kb on + strand, within Shewana3_2523 at 3021.068 kb on - strand, within Shewana3_2523 at 3021.166 kb on - strand at 3021.354 kb on + strand at 3021.354 kb on + strand at 3021.498 kb on - strand at 3021.498 kb on - strand at 3021.498 kb on - strand at 3021.644 kb on - strand at 3021.722 kb on - strand, within Shewana3_2524 at 3021.961 kb on + strand, within Shewana3_2524 at 3022.348 kb on - strand, within Shewana3_2524 at 3022.585 kb on + strand, within Shewana3_2524 at 3022.864 kb on - strand, within Shewana3_2524 at 3022.878 kb on + strand, within Shewana3_2524 at 3023.198 kb on - strand at 3023.335 kb on - strand at 3023.755 kb on + strand at 3023.775 kb on - strand at 3023.855 kb on - strand, within Shewana3_2526 at 3023.893 kb on + strand, within Shewana3_2526 at 3023.895 kb on + strand, within Shewana3_2526 at 3024.256 kb on + strand, within Shewana3_2526
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 3,020,738 - Shewana3_2523 0.71 +0.7 3,020,838 + Shewana3_2523 0.76 -0.0 3,021,004 - Shewana3_2523 0.84 -0.8 3,021,060 + Shewana3_2523 0.87 -0.1 3,021,068 - Shewana3_2523 0.88 +0.6 3,021,166 - -0.0 3,021,354 + -0.9 3,021,354 + -0.5 3,021,498 - +0.4 3,021,498 - -0.0 3,021,498 - -0.1 3,021,644 - +0.2 3,021,722 - Shewana3_2524 0.10 -0.4 3,021,961 + Shewana3_2524 0.24 -1.4 3,022,348 - Shewana3_2524 0.46 -2.0 3,022,585 + Shewana3_2524 0.59 +2.6 3,022,864 - Shewana3_2524 0.75 -0.0 3,022,878 + Shewana3_2524 0.76 +1.0 3,023,198 - -0.8 3,023,335 - -1.2 3,023,755 + +1.0 3,023,775 - -0.4 3,023,855 - Shewana3_2526 0.14 -0.3 3,023,893 + Shewana3_2526 0.18 -0.4 3,023,895 + Shewana3_2526 0.18 -0.4 3,024,256 + Shewana3_2526 0.49 -0.0
Or see this region's nucleotide sequence