Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2429 and Shewana3_2430 are separated by 100 nucleotides Shewana3_2430 and Shewana3_2431 are separated by 157 nucleotides
Shewana3_2429: Shewana3_2429 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,912,312 to 2,913,424
_2429
Shewana3_2430: Shewana3_2430 - LysR family transcriptional regulator (RefSeq), at 2,913,525 to 2,914,391
_2430
Shewana3_2431: Shewana3_2431 - diguanylate cyclase (RefSeq), at 2,914,549 to 2,915,538
_2431
Position (kb)
2913
2914
2915 Strain fitness (log2 ratio)
-2
-1
0
1 at 2912.698 kb on + strand, within Shewana3_2429 at 2912.700 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.706 kb on - strand, within Shewana3_2429 at 2912.766 kb on - strand, within Shewana3_2429 at 2912.942 kb on - strand, within Shewana3_2429 at 2913.018 kb on - strand, within Shewana3_2429 at 2913.176 kb on + strand, within Shewana3_2429 at 2913.208 kb on + strand, within Shewana3_2429 at 2913.732 kb on + strand, within Shewana3_2430 at 2913.828 kb on - strand, within Shewana3_2430 at 2913.862 kb on - strand, within Shewana3_2430 at 2913.958 kb on + strand, within Shewana3_2430 at 2914.136 kb on - strand, within Shewana3_2430 at 2914.184 kb on - strand, within Shewana3_2430 at 2914.266 kb on + strand, within Shewana3_2430 at 2914.789 kb on + strand, within Shewana3_2431 at 2914.797 kb on - strand, within Shewana3_2431 at 2914.850 kb on + strand, within Shewana3_2431 at 2915.028 kb on - strand, within Shewana3_2431 at 2915.129 kb on - strand, within Shewana3_2431 at 2915.369 kb on - strand, within Shewana3_2431
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,912,698 + Shewana3_2429 0.35 -0.0 2,912,700 - Shewana3_2429 0.35 +0.6 2,912,706 - Shewana3_2429 0.35 -0.1 2,912,706 - Shewana3_2429 0.35 +0.3 2,912,766 - Shewana3_2429 0.41 -0.7 2,912,942 - Shewana3_2429 0.57 +0.1 2,913,018 - Shewana3_2429 0.63 +0.8 2,913,176 + Shewana3_2429 0.78 -0.8 2,913,208 + Shewana3_2429 0.81 -0.4 2,913,732 + Shewana3_2430 0.24 -1.9 2,913,828 - Shewana3_2430 0.35 -1.0 2,913,862 - Shewana3_2430 0.39 +0.2 2,913,958 + Shewana3_2430 0.50 -0.9 2,914,136 - Shewana3_2430 0.70 -1.8 2,914,184 - Shewana3_2430 0.76 -0.8 2,914,266 + Shewana3_2430 0.85 -1.0 2,914,789 + Shewana3_2431 0.24 +0.7 2,914,797 - Shewana3_2431 0.25 -0.4 2,914,850 + Shewana3_2431 0.30 -0.6 2,915,028 - Shewana3_2431 0.48 -0.0 2,915,129 - Shewana3_2431 0.59 -0.7 2,915,369 - Shewana3_2431 0.83 -0.4
Or see this region's nucleotide sequence