Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2308

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntddl and Shewana3_2308 are separated by 78 nucleotidesShewana3_2308 and Shewana3_2309 are separated by 151 nucleotides Shewana3_2307: ddl - D-alanyl-alanine synthetase A (RefSeq), at 2,772,189 to 2,773,199 ddl Shewana3_2308: Shewana3_2308 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,773,278 to 2,775,536 _2308 Shewana3_2309: Shewana3_2309 - Fmu (Sun) domain-containing protein (RefSeq), at 2,775,688 to 2,776,902 _2309 Position (kb) 2773 2774 2775 2776Strain fitness (log2 ratio) -1 0 1 2at 2773.196 kb on + strandat 2774.167 kb on - strand, within Shewana3_2308at 2774.394 kb on + strand, within Shewana3_2308at 2774.403 kb on - strand, within Shewana3_2308at 2774.529 kb on - strand, within Shewana3_2308at 2774.670 kb on + strand, within Shewana3_2308at 2774.860 kb on + strand, within Shewana3_2308at 2775.119 kb on + strand, within Shewana3_2308at 2775.127 kb on - strand, within Shewana3_2308at 2775.445 kb on - strandat 2775.936 kb on - strand, within Shewana3_2309at 2776.192 kb on - strand, within Shewana3_2309at 2776.307 kb on + strand, within Shewana3_2309at 2776.467 kb on - strand, within Shewana3_2309at 2776.477 kb on - strand, within Shewana3_2309

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,773,196 + -0.5
2,774,167 - Shewana3_2308 0.39 +0.7
2,774,394 + Shewana3_2308 0.49 +0.7
2,774,403 - Shewana3_2308 0.50 -1.3
2,774,529 - Shewana3_2308 0.55 -1.1
2,774,670 + Shewana3_2308 0.62 +0.7
2,774,860 + Shewana3_2308 0.70 -0.6
2,775,119 + Shewana3_2308 0.81 -0.6
2,775,127 - Shewana3_2308 0.82 -1.3
2,775,445 - +2.7
2,775,936 - Shewana3_2309 0.20 +1.2
2,776,192 - Shewana3_2309 0.41 +0.5
2,776,307 + Shewana3_2309 0.51 +0.7
2,776,467 - Shewana3_2309 0.64 +0.2
2,776,477 - Shewana3_2309 0.65 +0.6

Or see this region's nucleotide sequence