Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2095 and Shewana3_2096 overlap by 8 nucleotides Shewana3_2096 and mukB overlap by 8 nucleotides mukB and Shewana3_2098 overlap by 4 nucleotides
Shewana3_2095: Shewana3_2095 - hypothetical protein (RefSeq), at 2,515,287 to 2,516,345
_2095
Shewana3_2096: Shewana3_2096 - thioredoxin-disulfide reductase (RefSeq), at 2,516,338 to 2,517,120
_2096
Shewana3_2097: mukB - cell division protein MukB (RefSeq), at 2,517,113 to 2,521,666
mukB
Shewana3_2098: Shewana3_2098 - hypothetical protein (RefSeq), at 2,521,663 to 2,522,613
_2098
Position (kb)
2517
2518
2519
2520
2521
2522 Strain fitness (log2 ratio)
-1
0
1
2 at 2516.282 kb on + strand at 2516.370 kb on - strand at 2516.384 kb on + strand at 2516.384 kb on + strand at 2516.532 kb on + strand, within Shewana3_2096 at 2516.639 kb on - strand, within Shewana3_2096 at 2516.862 kb on + strand, within Shewana3_2096 at 2517.274 kb on + strand at 2517.282 kb on + strand at 2517.509 kb on - strand at 2517.527 kb on - strand at 2517.696 kb on + strand, within mukB at 2517.925 kb on + strand, within mukB at 2518.054 kb on - strand, within mukB at 2518.324 kb on + strand, within mukB at 2518.351 kb on - strand, within mukB at 2518.436 kb on - strand, within mukB at 2518.633 kb on + strand, within mukB at 2518.668 kb on + strand, within mukB at 2518.676 kb on - strand, within mukB at 2518.676 kb on - strand, within mukB at 2519.103 kb on + strand, within mukB at 2519.171 kb on - strand, within mukB at 2519.560 kb on + strand, within mukB at 2519.613 kb on + strand, within mukB at 2519.645 kb on + strand, within mukB at 2520.023 kb on + strand, within mukB at 2520.421 kb on - strand, within mukB at 2520.658 kb on - strand, within mukB at 2520.719 kb on - strand, within mukB at 2521.085 kb on + strand, within mukB at 2521.448 kb on + strand at 2521.496 kb on + strand at 2521.680 kb on - strand at 2521.747 kb on + strand at 2521.794 kb on + strand, within Shewana3_2098 at 2522.088 kb on + strand, within Shewana3_2098 at 2522.094 kb on - strand, within Shewana3_2098 at 2522.230 kb on - strand, within Shewana3_2098 at 2522.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,516,282 + +0.3 2,516,370 - +0.4 2,516,384 + -1.7 2,516,384 + -0.7 2,516,532 + Shewana3_2096 0.25 -1.0 2,516,639 - Shewana3_2096 0.38 -0.8 2,516,862 + Shewana3_2096 0.67 +2.0 2,517,274 + -0.8 2,517,282 + +0.4 2,517,509 - +1.6 2,517,527 - -0.5 2,517,696 + mukB Shewana3_2097 0.13 +1.5 2,517,925 + mukB Shewana3_2097 0.18 +0.2 2,518,054 - mukB Shewana3_2097 0.21 +0.8 2,518,324 + mukB Shewana3_2097 0.27 +1.4 2,518,351 - mukB Shewana3_2097 0.27 +1.8 2,518,436 - mukB Shewana3_2097 0.29 +1.8 2,518,633 + mukB Shewana3_2097 0.33 +0.5 2,518,668 + mukB Shewana3_2097 0.34 +1.2 2,518,676 - mukB Shewana3_2097 0.34 -0.5 2,518,676 - mukB Shewana3_2097 0.34 +1.2 2,519,103 + mukB Shewana3_2097 0.44 -0.7 2,519,171 - mukB Shewana3_2097 0.45 -0.5 2,519,560 + mukB Shewana3_2097 0.54 -0.5 2,519,613 + mukB Shewana3_2097 0.55 +1.8 2,519,645 + mukB Shewana3_2097 0.56 -0.4 2,520,023 + mukB Shewana3_2097 0.64 -0.8 2,520,421 - mukB Shewana3_2097 0.73 -0.5 2,520,658 - mukB Shewana3_2097 0.78 +0.2 2,520,719 - mukB Shewana3_2097 0.79 -0.2 2,521,085 + mukB Shewana3_2097 0.87 +0.5 2,521,448 + +0.8 2,521,496 + -1.4 2,521,680 - +1.8 2,521,747 + +0.6 2,521,794 + Shewana3_2098 0.14 -0.5 2,522,088 + Shewana3_2098 0.45 -0.7 2,522,094 - Shewana3_2098 0.45 +1.8 2,522,230 - Shewana3_2098 0.60 +1.8 2,522,602 + -0.9
Or see this region's nucleotide sequence