Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2077 and Shewana3_2078 are separated by 66 nucleotides Shewana3_2078 and Shewana3_2079 are separated by 307 nucleotides
Shewana3_2077: Shewana3_2077 - glycoside hydrolase family protein (RefSeq), at 2,485,902 to 2,487,035
_2077
Shewana3_2078: Shewana3_2078 - glycoside hydrolase family protein (RefSeq), at 2,487,102 to 2,488,103
_2078
Shewana3_2079: Shewana3_2079 - hypothetical protein (RefSeq), at 2,488,411 to 2,489,001
_2079
Position (kb)
2487
2488
2489 Strain fitness (log2 ratio)
-2
-1
0
1 at 2486.227 kb on - strand, within Shewana3_2077 at 2486.458 kb on + strand, within Shewana3_2077 at 2486.465 kb on + strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.466 kb on - strand, within Shewana3_2077 at 2486.506 kb on - strand, within Shewana3_2077 at 2486.717 kb on + strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.725 kb on - strand, within Shewana3_2077 at 2486.801 kb on - strand, within Shewana3_2077 at 2486.867 kb on + strand, within Shewana3_2077 at 2486.877 kb on - strand, within Shewana3_2077 at 2486.930 kb on - strand at 2486.998 kb on + strand at 2487.221 kb on + strand, within Shewana3_2078 at 2487.244 kb on + strand, within Shewana3_2078 at 2487.252 kb on - strand, within Shewana3_2078 at 2487.544 kb on - strand, within Shewana3_2078 at 2487.612 kb on + strand, within Shewana3_2078 at 2487.985 kb on - strand, within Shewana3_2078 at 2488.087 kb on + strand at 2488.345 kb on + strand at 2488.359 kb on - strand at 2488.686 kb on + strand, within Shewana3_2079 at 2488.696 kb on + strand, within Shewana3_2079 at 2488.882 kb on - strand, within Shewana3_2079
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,486,227 - Shewana3_2077 0.29 +1.1 2,486,458 + Shewana3_2077 0.49 +0.0 2,486,465 + Shewana3_2077 0.50 +1.7 2,486,466 - Shewana3_2077 0.50 +0.1 2,486,466 - Shewana3_2077 0.50 +0.7 2,486,506 - Shewana3_2077 0.53 -1.7 2,486,717 + Shewana3_2077 0.72 +0.5 2,486,725 - Shewana3_2077 0.73 -1.8 2,486,725 - Shewana3_2077 0.73 -0.2 2,486,801 - Shewana3_2077 0.79 -0.0 2,486,867 + Shewana3_2077 0.85 -1.4 2,486,877 - Shewana3_2077 0.86 +1.2 2,486,930 - -0.4 2,486,998 + +0.2 2,487,221 + Shewana3_2078 0.12 -0.2 2,487,244 + Shewana3_2078 0.14 +0.0 2,487,252 - Shewana3_2078 0.15 -1.2 2,487,544 - Shewana3_2078 0.44 -0.5 2,487,612 + Shewana3_2078 0.51 +0.8 2,487,985 - Shewana3_2078 0.88 -0.2 2,488,087 + -0.2 2,488,345 + -0.8 2,488,359 - +0.3 2,488,686 + Shewana3_2079 0.47 +0.1 2,488,696 + Shewana3_2079 0.48 +0.4 2,488,882 - Shewana3_2079 0.80 -0.2
Or see this region's nucleotide sequence