Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1964

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntansA and Shewana3_1964 are separated by 111 nucleotidesShewana3_1964 and Shewana3_1965 are separated by 165 nucleotides Shewana3_1963: ansA - cytoplasmic asparaginase I (RefSeq), at 2,335,749 to 2,336,762 ansA Shewana3_1964: Shewana3_1964 - signal peptide peptidase SppA, 67K type (RefSeq), at 2,336,874 to 2,338,718 _1964 Shewana3_1965: Shewana3_1965 - 2,4-dienoyl-CoA reductase (RefSeq), at 2,338,884 to 2,340,902 _1965 Position (kb) 2336 2337 2338 2339Strain fitness (log2 ratio) -2 -1 0 1 2at 2335.938 kb on - strand, within ansAat 2336.041 kb on - strand, within ansAat 2336.150 kb on - strand, within ansAat 2336.215 kb on + strand, within ansAat 2336.463 kb on + strandat 2336.541 kb on - strand, within ansAat 2336.760 kb on + strandat 2336.920 kb on - strandat 2336.981 kb on + strandat 2337.126 kb on + strand, within Shewana3_1964at 2337.500 kb on + strand, within Shewana3_1964at 2337.814 kb on - strand, within Shewana3_1964at 2338.023 kb on + strand, within Shewana3_1964at 2338.094 kb on - strand, within Shewana3_1964at 2338.317 kb on + strand, within Shewana3_1964at 2338.385 kb on - strand, within Shewana3_1964at 2339.364 kb on - strand, within Shewana3_1965

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,335,938 - ansA Shewana3_1963 0.19 +0.2
2,336,041 - ansA Shewana3_1963 0.29 -1.8
2,336,150 - ansA Shewana3_1963 0.40 -0.2
2,336,215 + ansA Shewana3_1963 0.46 -1.1
2,336,463 + -0.6
2,336,541 - ansA Shewana3_1963 0.78 -1.6
2,336,760 + -0.9
2,336,920 - +0.1
2,336,981 + +1.8
2,337,126 + Shewana3_1964 0.14 +1.8
2,337,500 + Shewana3_1964 0.34 +0.8
2,337,814 - Shewana3_1964 0.51 -1.0
2,338,023 + Shewana3_1964 0.62 +1.8
2,338,094 - Shewana3_1964 0.66 -1.3
2,338,317 + Shewana3_1964 0.78 -0.2
2,338,385 - Shewana3_1964 0.82 +0.8
2,339,364 - Shewana3_1965 0.24 +1.8

Or see this region's nucleotide sequence