Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1943 and Shewana3_1944 are separated by 174 nucleotides Shewana3_1944 and Shewana3_1945 are separated by 173 nucleotides
Shewana3_1943: Shewana3_1943 - protein-glutamate O-methyltransferase (RefSeq), at 2,309,162 to 2,311,384
_1943
Shewana3_1944: Shewana3_1944 - LysR family transcriptional regulator (RefSeq), at 2,311,559 to 2,312,461
_1944
Shewana3_1945: Shewana3_1945 - hypothetical protein (RefSeq), at 2,312,635 to 2,313,834
_1945
Position (kb)
2311
2312
2313 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2310.794 kb on - strand, within Shewana3_1943 at 2310.901 kb on + strand, within Shewana3_1943 at 2311.204 kb on + strand at 2311.349 kb on - strand at 2311.412 kb on - strand at 2311.425 kb on + strand at 2311.894 kb on + strand, within Shewana3_1944 at 2312.308 kb on + strand, within Shewana3_1944 at 2312.360 kb on - strand, within Shewana3_1944 at 2312.456 kb on + strand at 2312.464 kb on - strand at 2312.988 kb on - strand, within Shewana3_1945 at 2313.052 kb on - strand, within Shewana3_1945 at 2313.098 kb on + strand, within Shewana3_1945 at 2313.106 kb on - strand, within Shewana3_1945 at 2313.181 kb on - strand, within Shewana3_1945 at 2313.205 kb on - strand, within Shewana3_1945 at 2313.373 kb on + strand, within Shewana3_1945 at 2313.383 kb on - strand, within Shewana3_1945 at 2313.402 kb on - strand, within Shewana3_1945 at 2313.457 kb on + strand, within Shewana3_1945
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,310,794 - Shewana3_1943 0.73 +1.8 2,310,901 + Shewana3_1943 0.78 -0.3 2,311,204 + +1.8 2,311,349 - +0.8 2,311,412 - -0.7 2,311,425 + +0.8 2,311,894 + Shewana3_1944 0.37 -1.2 2,312,308 + Shewana3_1944 0.83 +0.6 2,312,360 - Shewana3_1944 0.89 -0.6 2,312,456 + -0.8 2,312,464 - +0.0 2,312,988 - Shewana3_1945 0.29 -0.1 2,313,052 - Shewana3_1945 0.35 -2.4 2,313,098 + Shewana3_1945 0.39 +0.8 2,313,106 - Shewana3_1945 0.39 -1.7 2,313,181 - Shewana3_1945 0.46 -0.3 2,313,205 - Shewana3_1945 0.47 +1.3 2,313,373 + Shewana3_1945 0.61 -0.9 2,313,383 - Shewana3_1945 0.62 -0.1 2,313,402 - Shewana3_1945 0.64 -0.4 2,313,457 + Shewana3_1945 0.69 +0.8
Or see this region's nucleotide sequence