Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1908 and Shewana3_1909 are separated by 438 nucleotides Shewana3_1909 and Shewana3_1910 are separated by 153 nucleotides
Shewana3_1908: Shewana3_1908 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,264,637 to 2,265,824
_1908
Shewana3_1909: Shewana3_1909 - carbonic anhydrase (RefSeq), at 2,266,263 to 2,266,868
_1909
Shewana3_1910: Shewana3_1910 - alpha/beta hydrolase fold (RefSeq), at 2,267,022 to 2,267,852
_1910
Position (kb)
2266
2267 Strain fitness (log2 ratio)
-1
0
1
2 at 2265.299 kb on - strand, within Shewana3_1908 at 2265.587 kb on - strand, within Shewana3_1908 at 2265.973 kb on + strand at 2265.995 kb on + strand at 2266.025 kb on - strand at 2266.057 kb on + strand at 2266.060 kb on - strand at 2266.083 kb on - strand at 2266.090 kb on + strand at 2266.586 kb on + strand, within Shewana3_1909 at 2266.641 kb on + strand, within Shewana3_1909 at 2266.999 kb on - strand at 2266.999 kb on - strand at 2267.192 kb on + strand, within Shewana3_1910 at 2267.197 kb on + strand, within Shewana3_1910 at 2267.200 kb on - strand, within Shewana3_1910 at 2267.461 kb on + strand, within Shewana3_1910 at 2267.463 kb on + strand, within Shewana3_1910 at 2267.604 kb on - strand, within Shewana3_1910 at 2267.621 kb on + strand, within Shewana3_1910 at 2267.632 kb on - strand, within Shewana3_1910 at 2267.651 kb on - strand, within Shewana3_1910
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,265,299 - Shewana3_1908 0.56 +0.5 2,265,587 - Shewana3_1908 0.80 +0.1 2,265,973 + +0.7 2,265,995 + +0.4 2,266,025 - +0.3 2,266,057 + -0.8 2,266,060 - +0.2 2,266,083 - +1.8 2,266,090 + +1.8 2,266,586 + Shewana3_1909 0.53 +0.8 2,266,641 + Shewana3_1909 0.62 -1.6 2,266,999 - +0.7 2,266,999 - +0.1 2,267,192 + Shewana3_1910 0.20 +1.2 2,267,197 + Shewana3_1910 0.21 -0.8 2,267,200 - Shewana3_1910 0.21 +1.1 2,267,461 + Shewana3_1910 0.53 +1.2 2,267,463 + Shewana3_1910 0.53 +0.8 2,267,604 - Shewana3_1910 0.70 -0.9 2,267,621 + Shewana3_1910 0.72 -0.4 2,267,632 - Shewana3_1910 0.73 +1.0 2,267,651 - Shewana3_1910 0.76 +0.1
Or see this region's nucleotide sequence