Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1872 and Shewana3_1873 overlap by 17 nucleotides Shewana3_1873 and Shewana3_1874 are separated by 161 nucleotides
Shewana3_1872: Shewana3_1872 - oxidoreductase alpha (molybdopterin) subunit (RefSeq), at 2,215,904 to 2,218,225
_1872
Shewana3_1873: Shewana3_1873 - formate dehydrogenase family accessory protein FdhD (RefSeq), at 2,218,209 to 2,219,069
_1873
Shewana3_1874: Shewana3_1874 - LysR family transcriptional regulator (RefSeq), at 2,219,231 to 2,220,109
_1874
Position (kb)
2218
2219
2220 Strain fitness (log2 ratio)
-1
0
1
2 at 2217.672 kb on + strand, within Shewana3_1872 at 2217.821 kb on - strand, within Shewana3_1872 at 2218.488 kb on + strand, within Shewana3_1873 at 2218.638 kb on + strand, within Shewana3_1873 at 2218.756 kb on - strand, within Shewana3_1873 at 2218.756 kb on - strand, within Shewana3_1873 at 2218.916 kb on + strand, within Shewana3_1873 at 2218.923 kb on + strand, within Shewana3_1873 at 2219.030 kb on + strand at 2219.120 kb on - strand at 2219.335 kb on + strand, within Shewana3_1874 at 2219.666 kb on - strand, within Shewana3_1874 at 2219.708 kb on - strand, within Shewana3_1874 at 2219.768 kb on + strand, within Shewana3_1874 at 2219.774 kb on - strand, within Shewana3_1874 at 2219.816 kb on - strand, within Shewana3_1874 at 2219.880 kb on + strand, within Shewana3_1874 at 2219.939 kb on + strand, within Shewana3_1874 at 2219.939 kb on + strand, within Shewana3_1874 at 2220.008 kb on - strand, within Shewana3_1874 at 2220.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,217,672 + Shewana3_1872 0.76 -1.1 2,217,821 - Shewana3_1872 0.83 -0.7 2,218,488 + Shewana3_1873 0.32 +0.7 2,218,638 + Shewana3_1873 0.50 +0.7 2,218,756 - Shewana3_1873 0.64 -1.5 2,218,756 - Shewana3_1873 0.64 -1.0 2,218,916 + Shewana3_1873 0.82 -0.4 2,218,923 + Shewana3_1873 0.83 -0.6 2,219,030 + +1.3 2,219,120 - +2.0 2,219,335 + Shewana3_1874 0.12 +0.5 2,219,666 - Shewana3_1874 0.49 -1.6 2,219,708 - Shewana3_1874 0.54 +0.1 2,219,768 + Shewana3_1874 0.61 +0.2 2,219,774 - Shewana3_1874 0.62 -0.6 2,219,816 - Shewana3_1874 0.67 +1.2 2,219,880 + Shewana3_1874 0.74 +0.5 2,219,939 + Shewana3_1874 0.81 -0.0 2,219,939 + Shewana3_1874 0.81 +1.0 2,220,008 - Shewana3_1874 0.88 -0.9 2,220,066 - +0.1
Or see this region's nucleotide sequence