Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1869 and Shewana3_1870 are separated by 58 nucleotides Shewana3_1870 and Shewana3_1871 overlap by 1 nucleotides Shewana3_1871 and Shewana3_1872 are separated by 210 nucleotides
Shewana3_1869: Shewana3_1869 - hydrogenase expression/formation protein HypD (RefSeq), at 2,213,489 to 2,214,628
_1869
Shewana3_1870: Shewana3_1870 - hydrogenase assembly chaperone hypC/hupF (RefSeq), at 2,214,687 to 2,214,932
_1870
Shewana3_1871: Shewana3_1871 - hydrogenase accessory protein HypB (RefSeq), at 2,214,932 to 2,215,693
_1871
Shewana3_1872: Shewana3_1872 - oxidoreductase alpha (molybdopterin) subunit (RefSeq), at 2,215,904 to 2,218,225
_1872
Position (kb)
2214
2215
2216 Strain fitness (log2 ratio)
-1
0
1 at 2214.031 kb on - strand, within Shewana3_1869 at 2214.257 kb on + strand, within Shewana3_1869 at 2214.284 kb on - strand, within Shewana3_1869 at 2214.345 kb on - strand, within Shewana3_1869 at 2214.489 kb on + strand, within Shewana3_1869 at 2214.813 kb on + strand, within Shewana3_1870 at 2215.304 kb on + strand, within Shewana3_1871 at 2215.386 kb on + strand, within Shewana3_1871 at 2215.441 kb on - strand, within Shewana3_1871 at 2215.532 kb on + strand, within Shewana3_1871 at 2215.532 kb on + strand, within Shewana3_1871 at 2215.540 kb on - strand, within Shewana3_1871 at 2215.540 kb on - strand, within Shewana3_1871 at 2215.666 kb on + strand at 2215.717 kb on - strand at 2215.900 kb on - strand at 2215.943 kb on + strand at 2215.990 kb on + strand at 2216.074 kb on + strand at 2216.089 kb on - strand at 2216.151 kb on - strand, within Shewana3_1872 at 2216.201 kb on - strand, within Shewana3_1872 at 2216.302 kb on + strand, within Shewana3_1872 at 2216.303 kb on + strand, within Shewana3_1872 at 2216.308 kb on + strand, within Shewana3_1872 at 2216.336 kb on + strand, within Shewana3_1872 at 2216.473 kb on - strand, within Shewana3_1872
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,214,031 - Shewana3_1869 0.48 -0.9 2,214,257 + Shewana3_1869 0.67 +1.7 2,214,284 - Shewana3_1869 0.70 +0.1 2,214,345 - Shewana3_1869 0.75 +0.2 2,214,489 + Shewana3_1869 0.88 +1.7 2,214,813 + Shewana3_1870 0.51 -0.6 2,215,304 + Shewana3_1871 0.49 +0.7 2,215,386 + Shewana3_1871 0.60 -0.6 2,215,441 - Shewana3_1871 0.67 -0.6 2,215,532 + Shewana3_1871 0.79 -0.0 2,215,532 + Shewana3_1871 0.79 +1.7 2,215,540 - Shewana3_1871 0.80 -1.5 2,215,540 - Shewana3_1871 0.80 -0.8 2,215,666 + +0.2 2,215,717 - -0.3 2,215,900 - +0.7 2,215,943 + +0.1 2,215,990 + +0.1 2,216,074 + -0.0 2,216,089 - -1.4 2,216,151 - Shewana3_1872 0.11 +0.2 2,216,201 - Shewana3_1872 0.13 +1.7 2,216,302 + Shewana3_1872 0.17 +1.7 2,216,303 + Shewana3_1872 0.17 +1.7 2,216,308 + Shewana3_1872 0.17 -1.5 2,216,336 + Shewana3_1872 0.19 +0.1 2,216,473 - Shewana3_1872 0.25 -0.1
Or see this region's nucleotide sequence