Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1815

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1813 and Shewana3_1814 are separated by 13 nucleotidesShewana3_1814 and Shewana3_1815 are separated by 304 nucleotidesShewana3_1815 and Shewana3_1816 are separated by 96 nucleotidesShewana3_1816 and Shewana3_1817 are separated by 4 nucleotides Shewana3_1813: Shewana3_1813 - von Willebrand factor, type A (RefSeq), at 2,139,735 to 2,141,318 _1813 Shewana3_1814: Shewana3_1814 - hypothetical protein (RefSeq), at 2,141,332 to 2,141,865 _1814 Shewana3_1815: Shewana3_1815 - hypothetical protein (RefSeq), at 2,142,170 to 2,142,850 _1815 Shewana3_1816: Shewana3_1816 - hypothetical protein (RefSeq), at 2,142,947 to 2,143,714 _1816 Shewana3_1817: Shewana3_1817 - hypothetical protein (RefSeq), at 2,143,719 to 2,144,261 _1817 Position (kb) 2142 2143Strain fitness (log2 ratio) -1 0 1at 2141.250 kb on + strandat 2141.266 kb on + strandat 2141.392 kb on + strand, within Shewana3_1814at 2141.432 kb on + strand, within Shewana3_1814at 2141.450 kb on - strand, within Shewana3_1814at 2141.455 kb on + strand, within Shewana3_1814at 2141.474 kb on - strand, within Shewana3_1814at 2141.603 kb on + strand, within Shewana3_1814at 2141.875 kb on + strandat 2141.980 kb on + strandat 2142.285 kb on + strand, within Shewana3_1815at 2142.293 kb on - strand, within Shewana3_1815at 2142.295 kb on + strand, within Shewana3_1815at 2142.435 kb on - strand, within Shewana3_1815at 2142.505 kb on + strand, within Shewana3_1815at 2142.740 kb on + strand, within Shewana3_1815at 2142.799 kb on - strandat 2143.134 kb on + strand, within Shewana3_1816at 2143.469 kb on - strand, within Shewana3_1816at 2143.773 kb on + strandat 2143.780 kb on - strand, within Shewana3_1817

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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2,141,250 + +0.0
2,141,266 + +0.3
2,141,392 + Shewana3_1814 0.11 +0.5
2,141,432 + Shewana3_1814 0.19 +0.8
2,141,450 - Shewana3_1814 0.22 +0.7
2,141,455 + Shewana3_1814 0.23 -0.4
2,141,474 - Shewana3_1814 0.27 +1.7
2,141,603 + Shewana3_1814 0.51 +0.4
2,141,875 + +0.4
2,141,980 + +0.5
2,142,285 + Shewana3_1815 0.17 -0.9
2,142,293 - Shewana3_1815 0.18 +1.7
2,142,295 + Shewana3_1815 0.18 -1.2
2,142,435 - Shewana3_1815 0.39 +0.7
2,142,505 + Shewana3_1815 0.49 +0.4
2,142,740 + Shewana3_1815 0.84 +0.2
2,142,799 - -0.5
2,143,134 + Shewana3_1816 0.24 -1.3
2,143,469 - Shewana3_1816 0.68 -1.6
2,143,773 + -0.0
2,143,780 - Shewana3_1817 0.11 +0.7

Or see this region's nucleotide sequence