Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1813 and Shewana3_1814 are separated by 13 nucleotides Shewana3_1814 and Shewana3_1815 are separated by 304 nucleotides Shewana3_1815 and Shewana3_1816 are separated by 96 nucleotides Shewana3_1816 and Shewana3_1817 are separated by 4 nucleotides
Shewana3_1813: Shewana3_1813 - von Willebrand factor, type A (RefSeq), at 2,139,735 to 2,141,318
_1813
Shewana3_1814: Shewana3_1814 - hypothetical protein (RefSeq), at 2,141,332 to 2,141,865
_1814
Shewana3_1815: Shewana3_1815 - hypothetical protein (RefSeq), at 2,142,170 to 2,142,850
_1815
Shewana3_1816: Shewana3_1816 - hypothetical protein (RefSeq), at 2,142,947 to 2,143,714
_1816
Shewana3_1817: Shewana3_1817 - hypothetical protein (RefSeq), at 2,143,719 to 2,144,261
_1817
Position (kb)
2142
2143 Strain fitness (log2 ratio)
-1
0
1 at 2141.250 kb on + strand at 2141.266 kb on + strand at 2141.392 kb on + strand, within Shewana3_1814 at 2141.432 kb on + strand, within Shewana3_1814 at 2141.450 kb on - strand, within Shewana3_1814 at 2141.455 kb on + strand, within Shewana3_1814 at 2141.474 kb on - strand, within Shewana3_1814 at 2141.603 kb on + strand, within Shewana3_1814 at 2141.875 kb on + strand at 2141.980 kb on + strand at 2142.285 kb on + strand, within Shewana3_1815 at 2142.293 kb on - strand, within Shewana3_1815 at 2142.295 kb on + strand, within Shewana3_1815 at 2142.435 kb on - strand, within Shewana3_1815 at 2142.505 kb on + strand, within Shewana3_1815 at 2142.740 kb on + strand, within Shewana3_1815 at 2142.799 kb on - strand at 2143.134 kb on + strand, within Shewana3_1816 at 2143.469 kb on - strand, within Shewana3_1816 at 2143.773 kb on + strand at 2143.780 kb on - strand, within Shewana3_1817
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 2,141,250 + +0.0 2,141,266 + +0.3 2,141,392 + Shewana3_1814 0.11 +0.5 2,141,432 + Shewana3_1814 0.19 +0.8 2,141,450 - Shewana3_1814 0.22 +0.7 2,141,455 + Shewana3_1814 0.23 -0.4 2,141,474 - Shewana3_1814 0.27 +1.7 2,141,603 + Shewana3_1814 0.51 +0.4 2,141,875 + +0.4 2,141,980 + +0.5 2,142,285 + Shewana3_1815 0.17 -0.9 2,142,293 - Shewana3_1815 0.18 +1.7 2,142,295 + Shewana3_1815 0.18 -1.2 2,142,435 - Shewana3_1815 0.39 +0.7 2,142,505 + Shewana3_1815 0.49 +0.4 2,142,740 + Shewana3_1815 0.84 +0.2 2,142,799 - -0.5 2,143,134 + Shewana3_1816 0.24 -1.3 2,143,469 - Shewana3_1816 0.68 -1.6 2,143,773 + -0.0 2,143,780 - Shewana3_1817 0.11 +0.7
Or see this region's nucleotide sequence