Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1636 and Shewana3_1637 are separated by 9 nucleotides Shewana3_1637 and Shewana3_1638 are separated by 59 nucleotides
Shewana3_1636: Shewana3_1636 - SpoVR family protein (RefSeq), at 1,925,698 to 1,927,224
_1636
Shewana3_1637: Shewana3_1637 - hypothetical protein (RefSeq), at 1,927,234 to 1,928,508
_1637
Shewana3_1638: Shewana3_1638 - putative serine protein kinase, PrkA (RefSeq), at 1,928,568 to 1,930,502
_1638
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-1
0
1 at 1926.264 kb on - strand, within Shewana3_1636 at 1926.382 kb on - strand, within Shewana3_1636 at 1926.719 kb on + strand, within Shewana3_1636 at 1926.719 kb on + strand, within Shewana3_1636 at 1926.928 kb on - strand, within Shewana3_1636 at 1927.068 kb on + strand, within Shewana3_1636 at 1927.204 kb on - strand at 1927.490 kb on + strand, within Shewana3_1637 at 1927.630 kb on + strand, within Shewana3_1637 at 1927.758 kb on - strand, within Shewana3_1637 at 1927.853 kb on + strand, within Shewana3_1637 at 1928.147 kb on - strand, within Shewana3_1637 at 1928.287 kb on - strand, within Shewana3_1637 at 1928.319 kb on - strand, within Shewana3_1637 at 1928.778 kb on + strand, within Shewana3_1638 at 1929.165 kb on + strand, within Shewana3_1638 at 1929.320 kb on + strand, within Shewana3_1638 at 1929.328 kb on - strand, within Shewana3_1638 at 1929.335 kb on - strand, within Shewana3_1638 at 1929.358 kb on - strand, within Shewana3_1638 at 1929.441 kb on + strand, within Shewana3_1638
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,926,264 - Shewana3_1636 0.37 +0.2 1,926,382 - Shewana3_1636 0.45 -0.4 1,926,719 + Shewana3_1636 0.67 +0.6 1,926,719 + Shewana3_1636 0.67 -1.1 1,926,928 - Shewana3_1636 0.81 -0.4 1,927,068 + Shewana3_1636 0.90 -1.1 1,927,204 - -0.7 1,927,490 + Shewana3_1637 0.20 +0.1 1,927,630 + Shewana3_1637 0.31 -0.7 1,927,758 - Shewana3_1637 0.41 -0.2 1,927,853 + Shewana3_1637 0.49 -0.4 1,928,147 - Shewana3_1637 0.72 -0.9 1,928,287 - Shewana3_1637 0.83 -1.2 1,928,319 - Shewana3_1637 0.85 -0.4 1,928,778 + Shewana3_1638 0.11 -0.9 1,929,165 + Shewana3_1638 0.31 -0.5 1,929,320 + Shewana3_1638 0.39 +0.6 1,929,328 - Shewana3_1638 0.39 -1.7 1,929,335 - Shewana3_1638 0.40 +0.9 1,929,358 - Shewana3_1638 0.41 -0.7 1,929,441 + Shewana3_1638 0.45 -0.7
Or see this region's nucleotide sequence