Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1588 and Shewana3_1589 are separated by 82 nucleotides Shewana3_1589 and Shewana3_1590 are separated by 34 nucleotides Shewana3_1590 and Shewana3_1591 are separated by 261 nucleotides
Shewana3_1588: Shewana3_1588 - GCN5-related N-acetyltransferase (RefSeq), at 1,865,998 to 1,866,600
_1588
Shewana3_1589: Shewana3_1589 - GCN5-related N-acetyltransferase (RefSeq), at 1,866,683 to 1,867,147
_1589
Shewana3_1590: Shewana3_1590 - hypothetical protein (RefSeq), at 1,867,182 to 1,867,577
_1590
Shewana3_1591: Shewana3_1591 - hypothetical protein (RefSeq), at 1,867,839 to 1,868,225
_1591
Position (kb)
1866
1867
1868 Strain fitness (log2 ratio)
-1
0
1 at 1865.784 kb on - strand at 1865.788 kb on + strand at 1865.793 kb on + strand at 1866.363 kb on - strand, within Shewana3_1588 at 1866.592 kb on + strand at 1867.079 kb on + strand, within Shewana3_1589 at 1867.079 kb on + strand, within Shewana3_1589 at 1867.087 kb on - strand, within Shewana3_1589 at 1867.337 kb on + strand, within Shewana3_1590 at 1867.580 kb on - strand at 1867.580 kb on - strand at 1867.715 kb on + strand at 1867.723 kb on - strand at 1867.723 kb on - strand at 1867.744 kb on + strand at 1867.744 kb on + strand at 1867.788 kb on - strand at 1867.796 kb on - strand at 1868.067 kb on - strand, within Shewana3_1591
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,865,784 - +0.3 1,865,788 + +0.2 1,865,793 + -0.3 1,866,363 - Shewana3_1588 0.61 +0.7 1,866,592 + +0.1 1,867,079 + Shewana3_1589 0.85 +1.0 1,867,079 + Shewana3_1589 0.85 +0.8 1,867,087 - Shewana3_1589 0.87 +0.7 1,867,337 + Shewana3_1590 0.39 +0.4 1,867,580 - +0.3 1,867,580 - +1.7 1,867,715 + -0.3 1,867,723 - +0.7 1,867,723 - -0.3 1,867,744 + -0.2 1,867,744 + +0.0 1,867,788 - +0.7 1,867,796 - -0.2 1,868,067 - Shewana3_1591 0.59 -0.0
Or see this region's nucleotide sequence