Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1500 and Shewana3_1501 are separated by 212 nucleotides Shewana3_1501 and Shewana3_1502 are separated by 128 nucleotides Shewana3_1502 and Shewana3_1503 are separated by 239 nucleotides
Shewana3_1500: Shewana3_1500 - hypothetical protein (RefSeq), at 1,748,713 to 1,749,120
_1500
Shewana3_1501: Shewana3_1501 - GCN5-related N-acetyltransferase (RefSeq), at 1,749,333 to 1,749,875
_1501
Shewana3_1502: Shewana3_1502 - hypothetical protein (RefSeq), at 1,750,004 to 1,750,435
_1502
Shewana3_1503: Shewana3_1503 - exonuclease III (RefSeq), at 1,750,675 to 1,751,487
_1503
Position (kb)
1749
1750 Strain fitness (log2 ratio)
-2
-1
0
1 at 1748.464 kb on + strand at 1748.497 kb on + strand at 1748.505 kb on - strand at 1748.659 kb on + strand at 1748.667 kb on - strand at 1748.718 kb on - strand at 1748.720 kb on + strand at 1748.720 kb on + strand at 1748.728 kb on - strand at 1748.870 kb on + strand, within Shewana3_1500 at 1748.892 kb on + strand, within Shewana3_1500 at 1748.897 kb on + strand, within Shewana3_1500 at 1748.949 kb on - strand, within Shewana3_1500 at 1749.023 kb on + strand, within Shewana3_1500 at 1749.127 kb on - strand at 1749.151 kb on - strand at 1749.192 kb on + strand at 1749.197 kb on + strand at 1749.220 kb on - strand at 1749.238 kb on + strand at 1749.327 kb on + strand at 1749.327 kb on + strand at 1749.335 kb on - strand at 1749.335 kb on - strand at 1749.462 kb on + strand, within Shewana3_1501 at 1749.463 kb on + strand, within Shewana3_1501 at 1749.463 kb on + strand, within Shewana3_1501 at 1749.463 kb on + strand, within Shewana3_1501 at 1749.529 kb on + strand, within Shewana3_1501 at 1749.529 kb on + strand, within Shewana3_1501 at 1749.529 kb on + strand, within Shewana3_1501 at 1749.537 kb on - strand, within Shewana3_1501 at 1749.553 kb on + strand, within Shewana3_1501 at 1749.700 kb on + strand, within Shewana3_1501 at 1749.759 kb on + strand, within Shewana3_1501 at 1749.759 kb on + strand, within Shewana3_1501 at 1749.793 kb on + strand, within Shewana3_1501 at 1749.805 kb on + strand, within Shewana3_1501 at 1749.812 kb on + strand, within Shewana3_1501 at 1749.813 kb on - strand, within Shewana3_1501 at 1749.876 kb on + strand at 1749.884 kb on + strand at 1750.127 kb on + strand, within Shewana3_1502 at 1750.133 kb on + strand, within Shewana3_1502 at 1750.133 kb on + strand, within Shewana3_1502 at 1750.404 kb on + strand at 1750.514 kb on + strand at 1750.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,748,464 + +0.2 1,748,497 + -0.1 1,748,505 - -0.2 1,748,659 + -0.5 1,748,667 - +1.6 1,748,718 - -2.0 1,748,720 + -0.5 1,748,720 + +0.0 1,748,728 - +0.3 1,748,870 + Shewana3_1500 0.38 +0.5 1,748,892 + Shewana3_1500 0.44 +0.2 1,748,897 + Shewana3_1500 0.45 +0.8 1,748,949 - Shewana3_1500 0.58 +1.6 1,749,023 + Shewana3_1500 0.76 +0.7 1,749,127 - +0.0 1,749,151 - -0.4 1,749,192 + +0.5 1,749,197 + +0.1 1,749,220 - -0.5 1,749,238 + +0.0 1,749,327 + +1.3 1,749,327 + -0.5 1,749,335 - -1.0 1,749,335 - +0.0 1,749,462 + Shewana3_1501 0.24 +1.6 1,749,463 + Shewana3_1501 0.24 +0.6 1,749,463 + Shewana3_1501 0.24 +0.1 1,749,463 + Shewana3_1501 0.24 -0.0 1,749,529 + Shewana3_1501 0.36 +0.4 1,749,529 + Shewana3_1501 0.36 +0.3 1,749,529 + Shewana3_1501 0.36 +0.5 1,749,537 - Shewana3_1501 0.38 +0.0 1,749,553 + Shewana3_1501 0.41 +0.2 1,749,700 + Shewana3_1501 0.68 -0.1 1,749,759 + Shewana3_1501 0.78 -1.2 1,749,759 + Shewana3_1501 0.78 +0.5 1,749,793 + Shewana3_1501 0.85 +0.6 1,749,805 + Shewana3_1501 0.87 +0.3 1,749,812 + Shewana3_1501 0.88 +0.5 1,749,813 - Shewana3_1501 0.88 -0.7 1,749,876 + -1.0 1,749,884 + -0.2 1,750,127 + Shewana3_1502 0.28 +0.3 1,750,133 + Shewana3_1502 0.30 +1.0 1,750,133 + Shewana3_1502 0.30 +1.1 1,750,404 + +0.7 1,750,514 + +0.5 1,750,683 + -0.7
Or see this region's nucleotide sequence